input.data {InterCellar} | R Documentation

## Input Data example

### Description

A dataset obtained from Tirosh et al melanoma dataset, running CellPhoneDBv2. This data is generated by InterCellar running read.CPDBv2()

### Usage

    input.data

### Format

A data frame with 5638 rows and 11 variables:

int_pair

  interaction pair name, geneA & geneB

geneA

  name, hgnc_symbol

geneB

  name, hgnc_symbol

typeA

  molecular type of geneA, either L (ligand) or R (receptor)

typeB

  molecular type of geneB, either L (ligand) or R (receptor)

clustA

  name of first cluster, either character or number

clustB

  name of second cluster, either character or number

score

  int-pair score as avg expression of geneA and geneB over clustA and clustB, decimal

p_value

  int-pair pvalue, decimal

annotation_strategy

  database from which the int-pair was retrieved

int.type

  either autocrine or paracrine

[Package InterCellar version 2.0.0 Index]