read.CPDBv2 {InterCellar} | R Documentation

## Read output from CellPhoneDB v2.

### Description

Output is a folder containing 4 .txt files - deconvoluted.txt: containing list of single genes and their mean expression in each cluster (not considered); - means.txt: containing list of interacting pairs with info regarding L/R, annotation strategy and mean value of all pairs over cluster couples. - pvalues.txt: same as means, but containing pvalue of each pair, for each cluster couple. - significant_means.txt: only means of those pairs that have pvalue < 0.05. Has one more column:rank. If the statistical analysis is not run, the folder would contain only deconvoluted and means

### Usage

    read.CPDBv2(folder)

### Arguments

`folder` | folder containing output

### Value

input.data which is the pre-processed object with annotated L-R pairs

[Package InterCellar version 2.0.0 Index]