downloadPublicSeries {KnowSeq} | R Documentation

## Download automatically samples from NCBI/GEO and ArrayExpress public databases.

### Description

Download automatically samples from series of either microarray and RNA-seq. Furthermore, both NCBI/GEO and ArrayExpress public databases are supported. In the case of Microarray, the raw file are downloaded, if they are available, but for RNA-seq a csv is created with the necessary information to download the samples with the function `rawAlignment`.

### Usage

    downloadPublicSeries(samplesVector)

### Arguments

`samplesVector` | A vector which contains the different IDs of the wanted series. These IDs are the IDs of the series from NCBI/GEO or ArrayExpress.

### Value

Nothing to return.

### Examples

    downloadPublicSeries(c("GSE74251"))

[Package KnowSeq version 1.8.1 Index]