HeatmapView {MAGeCKFlute} | R Documentation

## Draw heatmap

### Description

Draw heatmap

### Usage

    HeatmapView(
      mat,
      limit = c(-2, 2),
      na_col = "gray70",
      colPal = rev(colorRampPalette(c("#c12603", "white", "#0073B6"), space = "Lab")(199)),
      filename = NA,
      width = NA,
      height = NA,
      ...
    )

### Arguments

`mat` | Matrix like object, each row is gene and each column is sample.
`limit` | Max value in heatmap
`na_col` | Color for missing values
`colPal` | colorRampPalette.
`filename` | File path where to save the picture.
`width` | Manual option for determining the output file width in inches.
`height` | Manual option for determining the output file height in inches.
`...` | Other parameters in pheatmap.

### Value

Invisibly a pheatmap object that is a list with components.

### Author(s)

Wubing Zhang

### Examples

    file3 = file.path(system.file("extdata", package = "MAGeCKFlute"),
    "testdata/mle.gene_summary.txt")
    dd = ReadBeta(file3)
    gg = cor(dd[,2:ncol(dd)])
    HeatmapView(gg, display_numbers = TRUE)

[Package MAGeCKFlute version 1.14.0 Index]