86f959df9442a8fbd732d738669ee69e *DESCRIPTION
9dd5649f8fecb86a9fdaef8bc9951362 *INDEX
ec864946f27f4fec12bbd2fad1c6313b *Meta/Rd.rds
15158a051762a5c15f31763c2f298bbb *Meta/data.rds
8503e676975364d771072956cdbca633 *Meta/features.rds
db6de2ad3ba25eaa355ac7ab55545a39 *Meta/hsearch.rds
98bda87d83805756473a6fac091dadd8 *Meta/links.rds
21264e5fe037b90abb543327fbfce353 *Meta/nsInfo.rds
4b81aff49a2f4741c8ef0726aa9b04e0 *Meta/package.rds
7ecdac59d62d0d8ca514038688dae999 *Meta/vignette.rds
c22c4bb6a5a3f7ad98e95e166974b7b1 *NAMESPACE
042b0b42af2c7e26799cf8ad6328ad9b *NEWS
48238dd470b6c913ee47f4c1c4779d38 *NEWS.md
d6c68f1fe41ced6e98a766a3757313da *R/MAST
a4c3ec837944905b984517e31d836441 *R/MAST.rdb
0c44d2ba264c88fa1773b2726fd068a6 *R/MAST.rdx
8030a86225e280b90ce2b598ed426bec *data/Rdata.rdb
d467b50887f3965059f29f62ecca04b0 *data/Rdata.rds
56fc7b203573bd65a38450a33c5ec369 *data/Rdata.rdx
79e5507d27c47b2832b69b48aaa359dc *doc/MAITAnalysis.R
e684d8df55bdf9026d0e99e7f40305e0 *doc/MAITAnalysis.Rmd
b4bef70e31227d371152e447080d6a79 *doc/MAITAnalysis.html
98a24a417484b688980a45b680dca195 *doc/MAST-Intro.R
72687859a2d635f0cfb4706d2361a0a8 *doc/MAST-Intro.Rmd
8fe1813425e9b53c1a1cbbdee64a0360 *doc/MAST-Intro.html
8ec93f53b19c514ca311ba58d1f6f5a9 *doc/MAST-interoperability.R
fbdfc594c2fb8c0a0a26bc70b78dfabf *doc/MAST-interoperability.Rmd
a56e4d367049b69efaaaca91442d9fa0 *doc/MAST-interoperability.html
c1cf0b4454c3ef05db53f0420d71d3ba *doc/index.html
cd78a3b6af88f9fc19eaf6834e1a9887 *extdata/BTM_for_GSEA_20131008.gmt
c9408bb9b798d9d03bfce8cfbbb002c6 *help/+22ZlmFit-summary+22.html
c9408bb9b798d9d03bfce8cfbbb002c6 *help/+22summary-ZlmFit+22+2C.html
b6e77a2d0c267508e90a195757003d2c *help/AnIndex
2ea1cf581c079ec4b78dc9ec99656ca9 *help/BayesGLMlike-class.html
9117a76b701b2f8770d3772e72cbe7ff *help/CoefficientHypothesis.html
0516a52e8f4a311ad26d01005b3f4c17 *help/CovFromBoots.html
8d1b651c03d3bfff8bf290dcad259c8e *help/Drop.html
5c168ac836f466a0412745abca23c1ee *help/FluidigmAssay.html
5c168ac836f466a0412745abca23c1ee *help/FromFlatDF.html
8a0b54bf30aa113cfdee36204d8b8123 *help/FromMatrix.html
4c1bb762341e7a1842fd80284fa8bbb8 *help/GLMlike-class.html
a706002413f7e46fed483fc32c179f81 *help/GSEATests-class.html
9117a76b701b2f8770d3772e72cbe7ff *help/Hypothesis.html
761eafaec1b6d8b97012137d563ed757 *help/LMERlike-class.html
3c00e993a982d0a2edc9f32d662b1130 *help/LMlike-class.html
0ac2cd00747a2e07d26e35c5339c6bf8 *help/LRT+2CSingleCellAssay+2Ccharacter-method.html
0ac2cd00747a2e07d26e35c5339c6bf8 *help/LRT.html
c33692d4ba4c6e7bb09d355fa778a0c3 *help/MAST-defunct.html
3cd20c6a162fa1f809b6320a6ec6467b *help/MAST-package.html
3cd20c6a162fa1f809b6320a6ec6467b *help/MAST.html
594433eb17fe043ae989377a90d9d1d1 *help/MAST.rdb
c46a7cf87b281cadd8511b96f997589e *help/MAST.rdx
d5bbcc81e2779dbe66692592a5bc8b0d *help/SceToSingleCellAssay.html
5c168ac836f466a0412745abca23c1ee *help/SingleCellAssay.html
b1c512476315cc60e35f2eee73d25114 *help/ZlmFit-class.html
b1c512476315cc60e35f2eee73d25114 *help/ZlmFit.html
efa2581566518d82329de29478dfab47 *help/aliases.rds
1284c08c1b15479a19947246d2e3784a *help/applyFlat.html
f2c7a74800b75a9f9f5c16e0405eef29 *help/assay+2CSingleCellAssay+2Cmissing-method.html
f2c7a74800b75a9f9f5c16e0405eef29 *help/assay_idx.html
700ab3a65297f56ae82f50f5cc306473 *help/bootVcov1.html
ad4246a1efe538439ab11c37b36e37a4 *help/burdenOfFiltering.html
c33692d4ba4c6e7bb09d355fa778a0c3 *help/cData.html
cd511db35bed2e2d66f17455d13d8aa0 *help/calcZ.html
761eafaec1b6d8b97012137d563ed757 *help/coef+2CLMERlike-method.html
b1c512476315cc60e35f2eee73d25114 *help/coef+2CZlmFit-method.html
36b473741f272696cca8a8de9c2fc8b5 *help/colData+3C-+2CSingleCellAssay+2CDataFrame-method.html
36b473741f272696cca8a8de9c2fc8b5 *help/colData-set-SingleCellAssay-DataFrame-method.html
06e1283605de7e769043357020b566e2 *help/collectResiduals.html
06e1283605de7e769043357020b566e2 *help/combined_residuals_hook.html
7618670c17c8482fd4290d6fad75686a *help/computeEtFromCt.html
8d6b2686c7a2438a29d792efec4476ba *help/condSd.html
8d6b2686c7a2438a29d792efec4476ba *help/condmean.html
06e1283605de7e769043357020b566e2 *help/continuous_residuals_hook.html
dd1e641111885e126f1af32825f40e75 *help/convertMASTClassicToSingleCellAssay.html
f2c7a74800b75a9f9f5c16e0405eef29 *help/defaultAssay.html
958b2ab2795a715a1fdcf891ca2c9baf *help/defaultPrior.html
06e1283605de7e769043357020b566e2 *help/deviance_residuals_hook.html
06e1283605de7e769043357020b566e2 *help/discrete_residuals_hook.html
7de90df34e355d4f266a91bbec79d9e4 *help/dof+2CGLMlike-method.html
7de90df34e355d4f266a91bbec79d9e4 *help/dof+2CLMERlike-method.html
7de90df34e355d4f266a91bbec79d9e4 *help/dof.html
835a6973c827babe27f20c489b1f3179 *help/ebayes.html
5258eb2ce527c36405e56692b91c9acb *help/expavg.html
c33692d4ba4c6e7bb09d355fa778a0c3 *help/exprs.html
c33692d4ba4c6e7bb09d355fa778a0c3 *help/fData.html
c33692d4ba4c6e7bb09d355fa778a0c3 *help/filter.html
612e440a8b0211840af604923a5ae53f *help/filterLowExpressedGenes.html
5ce18c4abb359774013e0e6df5d44b91 *help/fit+2CBayesGLMlike+2Cmissing-method.html
5ce18c4abb359774013e0e6df5d44b91 *help/fit+2CGLMlike+2Cmissing-method.html
5ce18c4abb359774013e0e6df5d44b91 *help/fit+2CLMERlike+2Cmissing-method.html
5ce18c4abb359774013e0e6df5d44b91 *help/fit.html
06e1283605de7e769043357020b566e2 *help/fitted_phat.html
8d6b2686c7a2438a29d792efec4476ba *help/freq.html
402d1ef27cbf3a9c1e4b35b35f78c716 *help/getConcordance.html
ff881fdd2ce67a3cf10eddcaf4224477 *help/getLogFC.html
402d1ef27cbf3a9c1e4b35b35f78c716 *help/getrc.html
402d1ef27cbf3a9c1e4b35b35f78c716 *help/getss.html
4fc2c732c49044420bbf42edc4e207f2 *help/getwellKey+2CSingleCellAssay-method.html
4fc2c732c49044420bbf42edc4e207f2 *help/getwellKey.html
402d1ef27cbf3a9c1e4b35b35f78c716 *help/getwss.html
30a792e8b13b9de963430cb71aee5c62 *help/gseaAfterBoot.html
30a792e8b13b9de963430cb71aee5c62 *help/gsea_control.html
ee601013c164711cddd4dd9a173f10a0 *help/hushWarning.html
5152bf0539b3d80bdafcf85a3680ca24 *help/impute.html
4b8a99f5543a312ed2e4d6e5cc3f010d *help/influence.bayesglm.html
64d62fabe51886f211eee6326f88227a *help/invlogit.html
ff881fdd2ce67a3cf10eddcaf4224477 *help/logFC.html
3c00e993a982d0a2edc9f32d662b1130 *help/logLik+2CGLMlike-method.html
761eafaec1b6d8b97012137d563ed757 *help/logLik+2CLMERlike-method.html
d16d052b3552f39216de09e5deb846b3 *help/logmean.html
3c00e993a982d0a2edc9f32d662b1130 *help/lrTest+2CLMlike+2CCoefficientHypothesis-method.html
3c00e993a982d0a2edc9f32d662b1130 *help/lrTest+2CLMlike+2CHypothesis-method.html
3c00e993a982d0a2edc9f32d662b1130 *help/lrTest+2CLMlike+2Ccharacter-method.html
3c00e993a982d0a2edc9f32d662b1130 *help/lrTest+2CLMlike+2Cmatrix-method.html
b1c512476315cc60e35f2eee73d25114 *help/lrTest+2CZlmFit+2CCoefficientHypothesis-method.html
b1c512476315cc60e35f2eee73d25114 *help/lrTest+2CZlmFit+2CHypothesis-method.html
8eff9b4ba0817fb399391d8ca8fee71a *help/lrTest+2CZlmFit+2Ccharacter-method.html
b1c512476315cc60e35f2eee73d25114 *help/lrTest+2CZlmFit+2Cmatrix-method.html
8eff9b4ba0817fb399391d8ca8fee71a *help/lrTest-ZlmFit-character-method.html
0b4bad2711ab866db3e325bb74603430 *help/lrTest.html
f2c7a74800b75a9f9f5c16e0405eef29 *help/magic_assay_names.html
37b1e559aa1e6095c6a858ef784084fb *help/maits-dataset.html
37b1e559aa1e6095c6a858ef784084fb *help/maits.html
ad4246a1efe538439ab11c37b36e37a4 *help/mast_filter.html
2f5e6365ceb4d76656efec7dc87bee19 *help/melt.SingleCellAssay.html
925c9fa3cc161b385161590225e070ce *help/model.matrix+2CLMlike-method.html
9c733c9afa1191e2f35e9e6c6547675a *help/model.matrix+3C-.html
9c733c9afa1191e2f35e9e6c6547675a *help/model.matrix-set.html
925c9fa3cc161b385161590225e070ce *help/model.matrix.html
1faffceb20220d9b062542cad2fb6748 *help/myBiplot.html
8d6b2686c7a2438a29d792efec4476ba *help/numexp.html
06e1283605de7e769043357020b566e2 *help/partialScore.html
947176e2ebee24028944f0971d842125 *help/paths.rds
700ab3a65297f56ae82f50f5cc306473 *help/pbootVcov1.html
0791ed93548b71234e28cc60dda2a22e *help/plot.thresholdSCRNACountMatrix.html
1bbbf42b93460d3f101d8715db512b3e *help/plotSCAConcordance.html
8e500bb0a690468224508db1963f21da *help/plotlrt.html
f190f4b5f998429c04dbd6f22c3edb87 *help/predict.ZlmFit.html
f140f188ed0a4adf7b14b92fc76f0a55 *help/predicted_sig-dataset.html
f140f188ed0a4adf7b14b92fc76f0a55 *help/predicted_sig.html
decde073159299f1a84aa457a086959a *help/primerAverage.html
b2ee4894adc957acbf77d60602d30e8e *help/print.summaryThresholdSCRNA.html
4675a0ec90eae4e2957371eb03fd8abe *help/print.summaryZlmFit.html
61049ae343be55bf417223df45da92f5 *help/read.fluidigm.html
270fc0e508bc0bbf2fc42103fe2e4839 *help/removeResponse.html
1a627a3d4349af3340618215848ea8d8 *help/rstandard.bayesglm.html
b1c512476315cc60e35f2eee73d25114 *help/se.coef+2CZlmFit-method.html
38d67bcffdb280357fdf0f7db1c5e1ad *help/se.coef.html
c462ca8d5e24adbe47b2dfce83a742bf *help/show+2CLMlike-method.html
c462ca8d5e24adbe47b2dfce83a742bf *help/show+2CZlmFit-method.html
c462ca8d5e24adbe47b2dfce83a742bf *help/show.html
bf07e4e027e7cc8f83b163b4a1bef7be *help/split+2CSingleCellAssay+2Ccharacter-method.html
bf07e4e027e7cc8f83b163b4a1bef7be *help/split+2CSingleCellAssay+2Cfactor-method.html
bf07e4e027e7cc8f83b163b4a1bef7be *help/split+2CSingleCellAssay+2Clist-method.html
bf07e4e027e7cc8f83b163b4a1bef7be *help/split-SingleCellAssay-character-method.html
260ff6c6b3c809b4eb70a664f0714175 *help/stat_ell.html
27732b0b824515d46b12a9700d07542c *help/subset+2CSingleCellAssay-method.html
27732b0b824515d46b12a9700d07542c *help/subset-SingleCellAssay-method.html
b5d9d66785431a34a5e8311270c0a4da *help/summarize.html
64e88c45f45c34831affbdb6fee8d39f *help/summary+2CGSEATests-method.html
3c00e993a982d0a2edc9f32d662b1130 *help/summary+2CLMlike-method.html
c9408bb9b798d9d03bfce8cfbbb002c6 *help/summary+2CZlmFit-method.html
64e88c45f45c34831affbdb6fee8d39f *help/summary-GSEATests-method.html
c9408bb9b798d9d03bfce8cfbbb002c6 *help/summary-ZlmFit-method.html
b2ee4894adc957acbf77d60602d30e8e *help/summary.thresholdSCRNACountMatrix.html
a55b51dc1564eb355adaab9b59759b22 *help/thresholdSCRNACountMatrix.html
761eafaec1b6d8b97012137d563ed757 *help/update+2CLMERlike-method.html
3c00e993a982d0a2edc9f32d662b1130 *help/update+2CLMlike-method.html
a7b8598a678ce0ccc88d5af93d78b8c9 *help/vbeta-dataset.html
a7b8598a678ce0ccc88d5af93d78b8c9 *help/vbeta.html
fabba383308b39afc846f28ddff6a70a *help/vbetaFA-dataset.html
fabba383308b39afc846f28ddff6a70a *help/vbetaFA.html
4c1bb762341e7a1842fd80284fa8bbb8 *help/vcov+2CGLMlike-method.html
761eafaec1b6d8b97012137d563ed757 *help/vcov+2CLMERlike-method.html
b1c512476315cc60e35f2eee73d25114 *help/vcov+2CZlmFit-method.html
3c00e993a982d0a2edc9f32d662b1130 *help/waldTest+2CLMlike+2CCoefficientHypothesis-method.html
3c00e993a982d0a2edc9f32d662b1130 *help/waldTest+2CLMlike+2Cmatrix-method.html
b1c512476315cc60e35f2eee73d25114 *help/waldTest+2CZlmFit+2CCoefficientHypothesis-method.html
b1c512476315cc60e35f2eee73d25114 *help/waldTest+2CZlmFit+2CHypothesis-method.html
47e0f9878a7d0dc9649f39738c36279a *help/waldTest+2CZlmFit+2Cmatrix-method.html
47e0f9878a7d0dc9649f39738c36279a *help/waldTest-ZlmFit-matrix-method.html
3a80250fbc9847aaa133427bc5af6717 *help/waldTest.html
edcea40bcefe833390b0f8f0863fd8ab *help/xform.html
bd1294e95ca459701c33b7a5d72f3e5c *help/zlm.SingleCellAssay.html
bd1294e95ca459701c33b7a5d72f3e5c *help/zlm.html
d948eb226b7cac6092501507b004e080 *html/00Index.html
524693f55a69d3ceed2f82ee25beaa81 *html/BayesGLMlike-class.html
32a8684b9ddc194f4e158685918f71fe *html/CovFromBoots.html
a7d3fd22f2a4875e9a6138a4aca988a2 *html/Drop.html
7c4c992380d6c1f6a88b0040434fe233 *html/FromFlatDF.html
0fa6e8b916f24eee160c100604a188fd *html/FromMatrix.html
6571ffa5993bf0c1cd4fa86845eb65e1 *html/GLMlike-class.html
ea5cf5a4d7047f165293a487383c12f5 *html/GSEATests-class.html
5ada1214ca15522c049592e370574e49 *html/Hypothesis.html
97f0f2f53969ccde87e912ea1b8c51bc *html/LMERlike-class.html
500f5755becbc357e8bda86c7707879b *html/LMlike-class.html
e2069ce06c566809e23652200c0a266d *html/LRT.html
42e0d2f1f57b2b9b91fb0ba0d8cf1116 *html/MAST-defunct.html
d65b59961c5cc65e926d12c3a2a9baac *html/MAST-package.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
125ad82b50a5573d51ce8bfcb37a9d00 *html/SceToSingleCellAssay.html
b80f53b566e22d9d968c9252e76dc343 *html/ZlmFit-class.html
8ad269d7cba007328218899fdf81fbcb *html/applyFlat.html
cdc0729fde2b4606e119639ac7efa527 *html/bootVcov1.html
6a50f7cf5b04122bdf1e5f729e63c1dd *html/calcZ.html
f033e8492afbb7da015384de6cd9ee2f *html/colData-set-SingleCellAssay-DataFrame-method.html
526d7fd39300dd02658f4df482d9e503 *html/collectResiduals.html
df69d447460b40ed13ea619be13b35cc *html/computeEtFromCt.html
e706784996c049ce0352e92012d4135a *html/convertMASTClassicToSingleCellAssay.html
69699d4528c75b5eb702ded6c2074dd2 *html/defaultAssay.html
c0a16e301a3a87f0fbdf4bcae4727ccb *html/defaultPrior.html
e41da4fb21d4b7e48d42c5fad74db90d *html/dof.html
a0b3fe55f01790b018784a9bba9c34a0 *html/ebayes.html
e2ba11b3b9d9010a97d360fdd954c6b4 *html/expavg.html
876678622af88f615400fa61e036816a *html/filterLowExpressedGenes.html
ec467d762afe29a435a0e49b48825099 *html/fit.html
db3bf04b9303b741a79d1c02b053ffbf *html/freq.html
b60b375b908751550ae56922bae09863 *html/getConcordance.html
d2cce1c8dd765e38b4cee61aee4984ad *html/getwellKey.html
193b95858f16facb4e17f3399960939b *html/gseaAfterBoot.html
e8913f639a27dd206fb8b6de6e3095c3 *html/hushWarning.html
54455ddd0078f87aa7ebc4b3e285bf77 *html/impute.html
28c44e55e434163acf7012fe4d7999fc *html/influence.bayesglm.html
48bbf86f32828aaae2adf8b945700d17 *html/invlogit.html
6c46f32dd314f001e962b2aa7356677e *html/logFC.html
b7ea3ded4b1b943acbdbc0fc75317d6a *html/logmean.html
6a585bc6cc2d742ac7fc134f90e13afc *html/lrTest-ZlmFit-character-method.html
c670f4df7697c78d18bf1f83e41f8e98 *html/lrTest.html
2b7e2c666b3bde13305ddac8c78ec19b *html/maits-dataset.html
3415b583b959a509cccbbc61dc10d22b *html/mast_filter.html
17d1d13e3d82d8eb042e8b81a6be9c90 *html/melt.SingleCellAssay.html
2fd2104d2ed67c5e1dd580c860b0ce2f *html/model.matrix-set.html
2e6b23502dd40f1f77b14476302d68a8 *html/model.matrix.html
e905d079e78d70cc08147ee37683aa05 *html/myBiplot.html
3cdfc12a9180de47f6f78b1485470073 *html/plot.thresholdSCRNACountMatrix.html
e86691ff4f7edd595e405231e6e3cd84 *html/plotSCAConcordance.html
a8d31ccbbc6f618a94e99fe8a6c70675 *html/plotlrt.html
de8e89142a1d3540d2c5da6e6ad8f2e7 *html/predict.ZlmFit.html
eff6c36e9c1361397f726c90622d8601 *html/predicted_sig-dataset.html
7f42ccd927e3db68e64ca38e605f2c86 *html/primerAverage.html
e8ec75ada18f85d4186f26bfa15a168e *html/print.summaryZlmFit.html
7d0dedfcd8d5407546af9b993f6f6886 *html/read.fluidigm.html
02f3b0232a4101db26b4890af8fc2b3e *html/removeResponse.html
598a6d6a04cbbaf562922ab6c9ead9b9 *html/rstandard.bayesglm.html
6c0144d653e0f6539dec4723e9c70735 *html/se.coef.html
641a21fe594ea80484ad513f8b153da6 *html/show.html
5c5d400c7b45053baa16de626522a868 *html/split-SingleCellAssay-character-method.html
d6cd4be09567a50361c0a40ec5cfe147 *html/stat_ell.html
16d1d3b7afa3c57c9624ed85f969fcc7 *html/subset-SingleCellAssay-method.html
342f7b51cb6868827e69a1371eed7a34 *html/summarize.html
7eb8ccc940a5efd867795f6c6c465460 *html/summary-GSEATests-method.html
9614022a452c838f724d68cac596cd75 *html/summary-ZlmFit-method.html
cd98d939bd04df8edc9d616ca0cacca6 *html/summary.thresholdSCRNACountMatrix.html
ba88bd7e22a25f9e558f937777717025 *html/thresholdSCRNACountMatrix.html
31f7add6d5aa0e8c4a7c987e0b32677e *html/vbeta-dataset.html
c53e6ced2079f33a5851f2f5ff14c0ad *html/vbetaFA-dataset.html
cce8826804a8aecbdb86cd826615a949 *html/waldTest-ZlmFit-matrix-method.html
901a6c4bf60cdf77fde4965bfbdaf973 *html/waldTest.html
7cddd00e6dc8d959676976ffa5f2b055 *html/xform.html
1a51f9d9441b10a96a729d83cbfa67c5 *html/zlm.html
