plot_enrichment_detailed {MOFA2} | R Documentation

## Plot detailed output of the Feature Set Enrichment Analysis

### Description

Method to plot a detailed output of the Feature Set Enrichment Analyisis (FSEA).
Each row corresponds to a significant pathway, sorted by statistical significance, and each dot corresponds to a gene.
For each pathway, we display the top genes of the pathway sorted by the corresponding feature statistic (by default, the absolute value of the weight) The top genes with the highest statistic (max.genes argument) are displayed and labeled in black. The remaining genes are colored in grey.

### Usage

    plot_enrichment_detailed(
      enrichment.results,
      factor,
      alpha = 0.1,
      max.genes = 5,
      max.pathways = 10,
      text_size = 3
    )

### Arguments

`enrichment.results` | output of run_enrichment function
`factor` | string with factor name or numeric with factor index
`alpha` | p.value threshold to filter out feature sets
`max.genes` | maximum number of genes to display, per pathway
`max.pathways` | maximum number of enriched pathways to display
`text_size` | size of the text to label the top genes

### Value

a `ggplot2` object

[Package MOFA2 version 1.4.0 Index]