plot_enrichment_heatmap {MOFA2} | R Documentation

## Heatmap of Feature Set Enrichment Analysis results

### Description

This method generates a heatmap with the adjusted p.values that result from the the feature set enrichment analysis. Rows are feature sets and columns are factors.

### Usage

    plot_enrichment_heatmap(
      enrichment.results,
      alpha = 0.1,
      cap = 1e-50,
      log_scale = TRUE,
      ...
    )

### Arguments

`enrichment.results` | output of run_enrichment function
`alpha` | FDR threshold to filter out unsignificant feature sets which are not represented in the heatmap. Default is 0.10.
`cap` | cap p-values below this threshold
`log_scale` | logical indicating whether to plot the -log of the p.values.
`...` | extra arguments to be passed to the pheatmap function

### Value

produces a heatmap

[Package MOFA2 version 1.4.0 Index]