create_mofa_from_SingleCellExperiment {MOFA2} | R Documentation

## create a MOFA object from a SingleCellExperiment object

### Description

Method to create a `MOFA` object from a SingleCellExperiment object

### Usage

    create_mofa_from_SingleCellExperiment(
      sce,
      groups = NULL,
      assay = "logcounts",
      extract_metadata = FALSE
    )

### Arguments

`sce` | SingleCellExperiment object
`groups` | a string specifying column name of the colData to use it as a group variable. Alternatively, a character vector with group assignment for every sample. Default is `NULL` (no group structure).
`assay` | assay to use, default is `logcounts`.
`extract_metadata` | logical indicating whether to incorporate the metadata from the SingleCellExperiment object into the MOFA object

### Value

Returns an untrained `MOFA` object

[Package MOFA2 version 1.4.0 Index]