PlotAndromedaScore {MQmetrics} | R Documentation

## Andromeda score for the best associated MS/MS spectrum.

### Description

Andromeda score for the best associated MS/MS spectrum.

### Usage

    PlotAndromedaScore(MQCombined, palette = "Set2", plots_per_page = 5)

### Arguments

`MQCombined` | Object list containing all the files from the MaxQuant output. It is the result from using `make_MQCombined`.
`palette` | The palette from the Package RColorBrewer. By default is 'Set2'.
`plots_per_page` | Establish the maximum number of plots per page.

### Value

Plots the MaxQuant Andromeda Score.

### Examples

    MQPathCombined <- system.file("extdata/combined/", package = "MQmetrics")
    MQCombined <- make_MQCombined(MQPathCombined)
    PlotAndromedaScore(MQCombined)

[Package MQmetrics version 1.2.0 Index]