PlotiRT {MQmetrics} | R Documentation

## Max intensities of the iRT peptides in each sample.

### Description

Max intensities of the iRT peptides in each sample.

### Usage

    PlotiRT(
      MQCombined,
      show_calibrated_rt = FALSE,
      tolerance = 0.001,
      plots_per_page = 5
    )

### Arguments

`MQCombined` | Object list containing all the files from the MaxQuant output. It is the result from using `make_MQCombined`.
`show_calibrated_rt` | If TRUE, it will also show the calibrated retention time of each iRT peptide. By default = FALSE.
`tolerance` | Error maximum to find the iRT peptides by m/z value. by default is 0.001.
`plots_per_page` | Establish the maximum number of plots per page.

### Value

A plot showing the iRT peptide in each sample vs the Retention time.

### Examples

    MQPathCombined <- system.file("extdata/combined/", package = "MQmetrics")
    MQCombined <- make_MQCombined(MQPathCombined)
    PlotiRT(MQCombined)

[Package MQmetrics version 1.2.0 Index]