MSstatsLiP_data {MSstatsLiP} | R Documentation

## MSstatsLiP_data

### Description

Example output of MSstatsLiP converter functions.

### Usage

    MSstatsLiP_data

### Format

A data.table consisting of 546 rows and 29 columns. Raw TrP data for use in testing and examples.

### Details

Example output of MSstatsLiP converter functions. (Eg. SpectronauttoMSstatsLiPFormat). A list containing two data.tables named LiP and TrP corresponding to the processed LiP and TrP data now in MSstatsLiP format. The data.tables contain the following columns:

- ProteinName : Character column of protein names

- PeptideSequence : Character column of peptide sequence name

- PrecursorCharge : Numeric charge feature

- FragmentIon : Character fragment ion feature

- ProductCharge : Numeric charge of product

- IsotopeLabelType : Character label type

- Condition : Character label for condition (Eg. Disease/Control)

- BioReplicate : Name of biological replicate

- Run : Name of run

- Fraction : Fraction number if fractionation is present

- Intensity : Unnormalized feature intensity

- FULL_PEPTIDE(LiP data only) : Combined protein name and peptide sequence. Used for LiP data only because LiP is summarized to peptide level (not protein)

### Examples

    head(MSstatsLiP_data$LiP)
    head(MSstatsLiP_data$TrP)

[Package MSstatsLiP version 1.0.0 Index]