LiPRawData {MSstatsLiP} | R Documentation

## LiPRawData

### Description

Example of input LiP dataset.

### Usage

    LiPRawData

### Format

A data.table consisting of 546 rows and 29 columns. Raw LiP data for use in testing and examples.

### Details

Input to MSstatsLiP converter SpectronauttoMSstatsLiPFormat. Contains the following columns:

- R.Condition : Label of conditions (EG Disease/Control)

- R.FileName : Name of spectral processing run

- R.Replicate : Name of biological replicate

- PG.ProteinAccessions : Protein name

- PG.ProteinGroups : Protein name, can be multiple

- PG.Quantity : Protein Quantity

- PEP.GroupingKey : Peptide grouping

- PEP.StrippedSequence : Peptide sequence

- PEP.Quantity : Peptide quantity

- EG.iRTPredicted : Predicted value

- EG.Library : Name of library

- EG.ModifiedSequence : Peptide sequence including any post-translational modifications

- EG.PrecursorId : Peptide sequence wiht modifications including charge

- EG.Qvalue : Qvalue

- FG.Charge : Identified Ion charge

- FG.Id : Peptide sequence with charge

- FG.PrecMz : Prec Mz reading

- FG.Quantity : Initial quantity reading

- F.Charge : F.Charge

- F.FrgIon : Fragment ion

- F.FrgLossType : Label for loss type

- F.FrgMz : Mz reading

- F.FrgNum : numeric Frg

- F.FrgType : character label for Frg

- F.ExcludedFromQuantification : True/False boolean for if to exclude

- F.NormalizedPeakArea : Normalized peak intensity

- F.NormalizedPeakHeight : Normalized peak height

- F.PeakArea : Unnormalized peak area

- F.PeakHeight : Unnormalized peak height

### Examples

    head(LiPRawData)

[Package MSstatsLiP version 1.0.0 Index]