.makeConditionPlot {MSstats} | R Documentation

## Make condition plot

### Description

Make condition plot

### Usage

    .makeConditionPlot(
      input,
      scale,
      single_protein,
      y.limdown,
      y.limup,
      x.axis.size,
      y.axis.size,
      text.size,
      text.angle,
      legend.size,
      dot.size.condition,
      yaxis.name
    )

### Arguments

`input` | data.table
`scale` | for "ConditionPlot" only, FALSE(default) means each conditional level is not scaled at x-axis according to its actual value (equal space at x-axis). TRUE means each conditional level is scaled at x-axis according to its actual value (unequal space at x-axis).
`single_protein` | data.table
`x.axis.size` | size of x-axis labeling for "Run" in Profile Plot and QC Plot, and "Condition" in Condition Plot. Default is 10.
`y.axis.size` | size of y-axis labels. Default is 10.
`text.size` | size of labels represented each condition at the top of graph in Profile Plot and QC plot. Default is 4.
`text.angle` | angle of labels represented each condition at the top of graph in Profile Plot and QC plot or x-axis labeling in Condition plot. Default is 0.
`legend.size` | size of feature legend (transition-level or peptide-level) above graph in Profile Plot. Default is 7.
`dot.size.condition` | size of dots in condition plot. Default is 3.

[Package MSstats version 4.1.1 Index]