MSstatsPrepareForGroupComparison {MSstats} | R Documentation

## Prepare output for dataProcess for group comparison

### Description

Prepare output for dataProcess for group comparison

### Usage

    MSstatsPrepareForGroupComparison(summarization_output)

### Arguments

`summarization_output` | output of dataProcess

### Value

list of run-level data for each protein in the input. This list has a "has_imputed" attribute that indicates if missing values were imputed in the input dataset.

### Examples

    QuantData <- dataProcess(SRMRawData, use_log_file = FALSE)
    group_comparison_input = MSstatsPrepareForGroupComparison(QuantData)
    length(group_comparison_input) # list of length equal to number of proteins
    # in protein-level data of QuantData
    head(group_comparison_input[[1]])

[Package MSstats version 4.1.1 Index]