Maf-class {MesKit} | R Documentation

## Maf class

### Description

Maf class.

### Slots

`data`

  data.table of MAF file containing somatic mutations.

`sample.info`

  data.frame of sample information per patient.

`nonSyn.vc`

  list of variant classifications which are considered as non-silent. Default NULL, use Variant Classifications with "Frame_Shift_Del", "Frame_Shift_Ins", "Splice_Site", "Translation_Start_Site", "Nonsense_Mutation", "Nonstop_Mutation", "In_Frame_Del", "In_Frame_Ins", "Missense_Mutation"

`ref.build`

  human reference genome version. Default 'hg19'. Optional: 'hg18' or 'hg38'.

[Package MesKit version 1.4.0 Index]