cart2Polar              Calculate polar coordinates from cartesian
                        coordinates
circosLegend            Plot a legend for circos plot
compare_Spectra         Create similarity matrix from
                        'MSnbase::MSpectra' object
compartmentTissue       Example data for 'MetCirc': 'compartmentTissue'
convertExampleDF        Example data for 'MetCirc': convertExampleDF
convertMsp2Spectra      Convert MSP data frame into object of class
                        'MSpectra'
createLink0df           Create a link matrix
createLinkDf            Create a data frame which contains features to
                        link (indices)
cutLinkDf               Create a cut data frame with information on
                        links
getLinkDfIndices        Get indices in linkDf of feature
highlight               Add links and highlight sectors
minFragCart2Polar       Calculate the nearest feature in polar
                        coordinates given cartesian coordinates
msp2spectra             Example data for 'MetCirc': 'msp2spectra'
neutralloss             Calculate similarity based on neutral losses
normalizeddotproduct    Calculate the normalized dot product
orderSimilarityMatrix   Order columns and rows of a similarity matrix
                        according to m/z, retention time and clustering
plotCircos              Circular plot to visualise similarity
plotSpectra             Plot pair-wise spectra
printInformationSelect
                        Display information on connected features of
                        selected features
recordPlotFill_degreeFeatures
                        Record a plot of filled features and the degree
                        of features
recordPlotHighlight     Return a 'recordedplot' of 'plotCircos' plot
                        with 'highlight = TRUE'
replayPlotAdd           Plot plotCircos or highlight
replayPlotOrder         Wrapper for 'replayPlot'
sd01_outputXCMS         Example data for 'MetCirc': 'sd01_outputXCMS'
sd02_deconvoluted       Example data for 'MetCirc': sd02_deconvoluted
select                  Select variable based on condition
shinyCircos             Interactive visualisation of similarity and
                        navigation of MS/MS features
similarityMat           Example data for 'MetCirc': 'similarityMat'
spectraCond             Get MS/MS spectra that are present in condition
spectra_tissue          Example data for 'MetCirc': 'spectra_tissue'
thresholdLinkDf         Threshold a data frame containing information
                        on links
tissue                  Example data for 'MetCirc': 'tissue'
typeMatch_link0         Get typeMatch and link0 data frame
