mn_data {MetaNeighbor} | R Documentation

## mn_data

### Description

A SummarizedExperiment object containing: a gene matrix, cell type labels, experiment labels, sets of genes, sample ID, study id and cell types.

### Usage

    mn_data

### Format

Gene matrix

  A gene-by-sample expression matrix consisting of 3157 rows (genes) and 1051 columns (cell types)

cell_labels

  1051x1 binary matrix that indicates whether a cell belongs to the SstNos cell type (1=yes, 0 = no)

sample_id

  A character vector of length 1051 that indicates the sample_id of each sample

study_id

  A character vector of length 1051 that indicates the study_id of each sample ("GSE60361" = Zeisel et al, "GSE71585" = Tasic et al)

cell_type

  A character vector of length 1051 that indicates the cell-type of each sample

### Source

Dataset:https://github.com/mm-shah/MetaNeighbor/tree/master/data 1. Zeisal et al. http://science.sciencemag.org/content/347/6226/1138 2. Tasic et al. http://www.nature.com/neuro/journal/v19/n2/full/nn.4216.html

[Package MetaNeighbor version 1.14.0 Index]