plotHeatmap {MetaNeighbor} | R Documentation

## Plots symmetric AUROC heatmap, clustering cell types by similarity.

### Description

Plots symmetric AUROC heatmap, clustering cell types by similarity.

### Usage

    plotHeatmap(aurocs, cex = 1, margins = c(8, 8), ...)

### Arguments

`aurocs` | A square AUROC matrix as returned by MetaNeighborUS.
`cex` | Size factor for row and column labels.
`margins` | Size of margins (for row and column labels).
`...` | Additional graphical parameters that are passed on to gplots::heatmap.2 (allows customization of the heatmap).

### See Also

`ggPlotHeatmap`

### Examples

    data(mn_data)
    var_genes = variableGenes(dat = mn_data, exp_labels = mn_data$study_id)
    celltype_NV = MetaNeighborUS(var_genes = var_genes,
                                 dat = mn_data,
                                 study_id = mn_data$study_id,
                                 cell_type = mn_data$cell_type)
    plotHeatmap(celltype_NV)

[Package MetaNeighbor version 1.14.0 Index]