plotMetaClusters {MetaNeighbor} | R Documentation

## Plot meta-cluster badges, each badge is a small AUROC heatmap restricted to a specific meta-cluster.

### Description

Plot meta-cluster badges, each badge is a small AUROC heatmap restricted to a specific meta-cluster.

### Usage

    plotMetaClusters(
      meta_clusters,
      best_hits,
      reorder = FALSE,
      cex = 1,
      study_cols = NULL,
      auroc_breaks = c(0, 0.5, 0.7, 0.9, 0.95, 0.99, 1),
      auroc_cols = (grDevices::colorRampPalette(c("white", "blue")))(length(auroc_breaks) -
        1)
    )

### Arguments

`meta_clusters` | Meta-cluster list generated by extractMetaClusters.
`best_hits` | Matrix of AUROCs used to extract meta-clusters.
`reorder` | Reorder datasets by similarity for each badge? By default, the same dataset ordering is used for each badge.
`cex` | Size factor controling label size.
`study_cols` | Named vector where values are RGB colors and names are unique study identifiers (corresponding to study_id). If NULL, a default color palette is used.
`auroc_breaks` | Numeric vector used to bin AUROC values for color coding.
`auroc_cols` | Vector containing RGB colors used to encode AUROC levels. The length of auroc_cols must correspond to the length of auroc_breaks - 1.

[Package MetaNeighbor version 1.14.0 Index]