MinDistParam-class {MinimumDistance} | R Documentation

## Class and methods for parameters of minimum distance algorithm

### Description

Contains parameters used for circular binary segmentation (package DNAcopy), parameters in the PennCNV hidden Markov model, and parameters used for computing emission probabilities.

### Usage

    ## S4 method for signature 'MinDistParam'
    nMAD(object)

    ## S4 replacement method for signature 'MinDistParam,numeric'
    nMAD(object) <- value

    ## S4 method for signature 'MinDistParam'
    show(object)

    ## S4 method for signature 'DNAcopyParam'
    show(object)

### Arguments

`object` | a `MinDistParam` object
`value` | a length-one numeric vector.

### Slots

`nMAD`

  a length-one numeric vector

`dnacopy`

  an object of class `DNAcopyParam`

`penncnv`

  an object of class `PennParam`

`emission`

  an object of class `EmissionParam`

`thin`

  a length-one non-negative integer

[Package MinimumDistance version 1.38.0 Index]