selectBestAndMean {ModCon} | R Documentation

## Select best HZEI and mean

### Description

From all sequences of a generation report highest HZEI integral and mean HZEI integral of all.

### Usage

    selectBestAndMean(sequenceVector, clusterName, increaseHZEI=TRUE)

### Arguments

`sequenceVector` | Character vector of nucleotide sequences
`clusterName` | Name of cluster generated with package parallel
`increaseHZEI` | Logical value if HZEI integral should be increased or decreased during SD degradation. If TRUE, function aims to increase HZEI integral.

### Value

Numeric vector of length 2 stating the best HZEI integral and the mean HZEI integral of a nucleotide sequence vector `sequenceVector`. Depending on the `increaseHZEI` mode, the best HZEI integral value is either the highest (for `increaseHZEI`==TRUE) or lowest (for `increaseHZEI`==FALSE).

### Examples

    ## Setup cluster
    library(parallel)
    nCores <- 1
    clust <- makeCluster(nCores)
    clusterExport(clust, list('getOverlappingVectorsFromVector', 'hex',
    'calculateHZEIint'), envir = environment())
    selectBestAndMean(c('CGCGATACGCTAAGCGCTACCGATAGTGGA','TGGGATATTTTAAGCGCTGACGATAGTGGA'),
    clust, increaseHZEI=TRUE)

[Package ModCon version 1.2.0 Index]