Modstrings-internals {Modstrings} | R Documentation

## Modstrings internals

### Description

Analog to `Biostrings` there are a few functions, which should only be used internally. Otherwise take care.

### Usage

    ## S4 method for signature 'ModDNAString'
    seqtype(x)

    ## S4 method for signature 'ModRNAString'
    seqtype(x)

    ## S4 replacement method for signature 'ModString'
    seqtype(x) <- value

    ## S4 method for signature 'ModString'
    XString(seqtype, x, start = NA, end = NA, width = NA)

    ## S4 replacement method for signature 'ModStringSet'
    seqtype(x) <- value

    ## S4 method for signature 'ModStringSet'
    XStringSet(seqtype, x, start = NA, end = NA, width = NA, use.names = TRUE)

    data(modsRNA)

    data(modsDNA)

    data(MOD_RNA_DICT_MODOMICS)

    data(MOD_RNA_DICT_TRNADB)

### Arguments

`seqtype, x, start, end, width, use.names, value` | used internally

### Format

An object of class `DataFrame` with 162 rows and 9 columns.

An object of class `DataFrame` with 47 rows and 5 columns.

An object of class `DataFrame` with 170 rows and 3 columns.

An object of class `DataFrame` with 60 rows and 3 columns.

### Value

a XString* object

[Package Modstrings version 1.10.0 Index]