ModStringSet-io {Modstrings} | R Documentation

## Read/write an ModStringSet object from/to a file

### Description

Functions to read/write an ModStringSet object from/to a file.

### Usage

    readModDNAStringSet(
      filepath,
      format = "fasta",
      nrec = -1L,
      skip = 0L,
      seek.first.rec = FALSE,
      use.names = TRUE,
      with.qualities = FALSE
    )

    readModRNAStringSet(
      filepath,
      format = "fasta",
      nrec = -1L,
      skip = 0L,
      seek.first.rec = FALSE,
      use.names = TRUE,
      with.qualities = FALSE
    )

    writeModStringSet(
      x,
      filepath,
      append = FALSE,
      compress = FALSE,
      compression_level = NA,
      format = "fasta",
      ...
    )

### Arguments

`filepath, format, nrec, skip, seek.first.rec, use.names, with.qualities, append, compress, compression_level, ...` | See `XStringSet-io` for more details.
`x` | A `ModStringSet` object.

### Value

A `ModStringSet` of the defined type.

### Examples

    seqs <- paste0(paste(alphabet(ModDNAString()), collapse = ""),
                   c("A","G","T"))
    seqs

    set <- ModDNAStringSet(seqs)
    set

    file <- tempfile()
    writeModStringSet(set, file)
    read <- readModDNAStringSet(file)
    read

[Package Modstrings version 1.10.0 Index]