plot_region {NanoMethViz} | R Documentation

## Plot region

### Description

Plot region

### Usage

    plot_region(x, chr, start, end, ...)

    ## S4 method for signature 'NanoMethResult,character,numeric,numeric'
    plot_region(
      x,
      chr,
      start,
      end,
      anno_regions = NULL,
      binary_threshold = NULL,
      spaghetti = FALSE,
      span = NULL,
      window_prop = 0
    )

    ## S4 method for signature 'NanoMethResult,factor,numeric,numeric'
    plot_region(
      x,
      chr,
      start,
      end,
      anno_regions = NULL,
      binary_threshold = NULL,
      spaghetti = FALSE,
      span = NULL,
      window_prop = 0
    )

### Arguments

`x` | the NanoMethResult object.
`chr` | the chromosome to plot.
`start` | the start of the plotting region.
`end` | the end of the plotting region.
`...` | additional arguments.
`anno_regions` | the data.frame of regions to be annotated.
`binary_threshold` | the modification probability such that calls with modification probability above the threshold are set to 1 and probabilities equalt to or below the threshold are set to 0.
`spaghetti` | whether or not individual reads should be shown.
`span` | the span for loess smoothing.
`window_prop` | the size of flanking region to plot. Can be a vector of two values for left and right window size. Values indicate proportion of gene length.

### Value

a patchwork plot containing the methylation profile in the specified region.

a patchwork plot containing the methylation profile in the specified region.

### Examples

    nmr <- load_example_nanomethresult()
    plot_region(nmr, "chr7", 6703892, 6730431)

    nmr <- load_example_nanomethresult()
    plot_region(nmr, "chr7", 6703892, 6730431)

[Package NanoMethViz version 2.0.0 Index]