bsseq_to_edger {NanoMethViz} | R Documentation

## Convert BSseq object to edgeR methylation matrix

### Description

Convert BSseq object to edgeR methylation matrix

### Usage

    bsseq_to_edger(bsseq, regions = NULL)

### Arguments

`bsseq` | the BSseq object.
`regions` | the regions to calculate log-methylation ratios over. If left NULL, ratios will be calculated per site.

### Value

a matrix compatible with the edgeR differential methylation pipeline

### Examples

    methy <- system.file("methy_subset.tsv.bgz", package = "NanoMethViz")
    bsseq <- methy_to_bsseq(methy)
    edger_mat <- bsseq_to_edger(bsseq)

[Package NanoMethViz version 2.0.0 Index]