read_merge_rcc {NanoTube} | R Documentation

## Merge multiple .rcc files

### Description

Read in multiple .rcc files named in the fileList and merge the expression data. This step is conducted within processNanostringData.

### Usage

    read_merge_rcc(fileList, includeQC = FALSE, logfile = "")

### Arguments

`fileList` | a character vector of .rcc file names
`includeQC` | include merged QC data (from the "Lane Attributes" part of file) in the output? Default FALSE
`logfile` | a filename for the logfile (optional). If blank, will print warnings to screen.

### Value

A list object including:

`exprs` | The expression matrix
`dict` | The gene dictionary
`qc` | QC metrics included in the .rcc files, if includeQC == TRUE

### Examples

    example_data <- system.file("extdata", "GSE117751_RAW", package = "NanoTube")

    dat <- read_merge_rcc(list.files(example_data, full.names = TRUE))

[Package NanoTube version 1.0.0 Index]