makeFGSEAmasterTable {NanoTube} | R Documentation

## Make master table of all GSEA results

### Description

This function clusters GSEA results by leading edge similarity, and then combines to a data frame or text file.

### Usage

    makeFGSEAmasterTable(
      genesetResults,
      leadingEdge,
      join.threshold = 0.5,
      ngroups = NULL,
      dist.method = "binary",
      filename = NULL
    )

### Arguments

`genesetResults` | Results from pathway analysis using limmaToFGSEA.
`leadingEdge` | Results from fgseaToLEdge
`join.threshold` | The threshold distance to join gene sets. Gene sets with a distance below this value will be joined to a single "cluster."
`ngroups` | The desired number of gene set groups. Either 'join.threshold' or 'ngroups' must be specified, 'ngroups' takes priority if both are specified.
`dist.method` | Method for distance calculation (see options for dist()). We recommend the 'binary' (also known as Jaccard) distance.
`filename` | File name for the output text file. If NULL (default), data will be returned as an R data frame.

### Value

A table of GSEA results, clustered by similarity of leading edge.

[Package NanoTube version 1.0.0 Index]