performNormalizations {NormalyzerDE} | R Documentation

## Main function for executing normalizations

### Description

Main function for executing normalizations

### Usage

    performNormalizations(
      nr,
      forceAll = FALSE,
      rtNorm = FALSE,
      rtStepSizeMinutes = 1,
      rtWindowMinCount = 100,
      rtWindowShifts = 1,
      rtWindowMergeMethod = "median",
      noLogTransform = FALSE,
      quiet = FALSE
    )

    ## S4 method for signature 'NormalyzerResults'
    performNormalizations(
      nr,
      forceAll = FALSE,
      rtNorm = FALSE,
      rtStepSizeMinutes = 1,
      rtWindowMinCount = 100,
      rtWindowShifts = 1,
      rtWindowMergeMethod = "median",
      noLogTransform = FALSE,
      quiet = FALSE
    )

### Arguments

`nr` | Normalyzer results object.
`forceAll` | Ignore dataset size limits and run all normalizations (only meant for testing purposes)
`rtNorm` | Perform retention time based normalizations
`rtStepSizeMinutes` | Retention time normalization window size.
`rtWindowMinCount` | Minimum number of datapoints in each retention-time segment.
`rtWindowShifts` | Number of layered retention time normalized windows.
`rtWindowMergeMethod` | Merge approach for layered retention time windows.
`noLogTransform` | Prevent log-transforming input
`quiet` | Don't show regular output messages

### Value

nr NormalyzerDE results object

[Package NormalyzerDE version 1.12.0 Index]