codonStartStop {ORFhunteR} | R Documentation

## Identify all potential start and stop codons in a nucleotide sequence

### Description

This function scans a nucleotide sequence of interest in the search of canonical start codon ATG or non-canonical start codons GTG, TTG and CTG as well as stop codons TAA, TAG and TGA.

### Usage

    codonStartStop(x)

### Arguments

`x` | character string giving the nucleotide sequence.

### Value

list of potential start and stop codons with their coordinates.

### Author(s)

Vasily V. Grinev

### Examples

    codons <- codonStartStop(x = "AAAATGGCATGGTAAGTC")

[Package ORFhunteR version 1.2.0 Index]