translateORFs {ORFhunteR} | R Documentation

## Translate open reading frames to proteins

### Description

Translate the identified open reading frames to proteins.

### Usage

    translateORFs(seqORFs, aaSymbol = 1, workDir = NULL)

### Arguments

`seqORFs` | character string giving the name of FASTA/FA file with sequences of identified open reading frames.
`aaSymbol` | type of amino acid symbols (one- or three-letter coding). Default value is 1.
`workDir` | character string giving the path to and name of work directory. NULL by default that mean the current working directory.

### Value

AAStringSet object with protein sequences.

### Author(s)

Vasily V. Grinev

### Examples

    seq_orf_path <- system.file("extdata",
                                "Set.trans_ORFs.sequences.fasta",
                                package = "ORFhunteR")
    prot_seqs <- translateORFs(seqORFs = seq_orf_path)

[Package ORFhunteR version 1.2.0 Index]