loadTrExper {ORFhunteR} | R Documentation

## Load a set of transcripts

### Description

Load a set of experimental transcripts.

### Usage

    loadTrExper(tr, genome = "BSgenome.Hsapiens.UCSC.hg38", workDir = NULL)

### Arguments

`tr` | character string giving the name of file with experimental transcripts. Allowed file formats are "fasta", "fa", "gtf" or "gff".
`genome` | character string giving the name of BSgenome data package with full genome sequences. Default value is "BSgenome.Hsapiens.UCSC.hg38".
`workDir` | character string giving the path to and name of work directory. NULL by default that mean the current working directory.

### Value

List of loaded transcript sequences.

### Author(s)

Vasily V. Grinev

### Examples

    trans <- system.file("extdata",
                         "Set.trans_sequences.fasta",
                         package = "ORFhunteR")
    trans_seq <- loadTrExper(tr = trans)

[Package ORFhunteR version 1.2.0 Index]