findORFs {ORFhunteR} | R Documentation

## Identify all variants of open reading frames in a nucleotide sequence

### Description

Identify all possible variants of open reading frames in a nucleotide sequence of interest.

### Usage

    findORFs(x, codStart = "ATG")

### Arguments

`x` | character string giving the nucleotide sequence of interest.
`codStart` | character string with type of start codon: "ATG", "GTG", "TTG" or "CTG". Default value is "ATG".

### Value

matrix with start and stop positions, length and sequence of identified variants of open reading frames.

### Author(s)

Vasily V. Grinev

### Examples

    x <- "AAAATGGCTGCGTAATGCAAAATGGCTGCGAATGCAAAATGGCTGCGAATGCCGGCACGTTGCTACGT"
    orf <- findORFs(x = x, codStart = "ATG")

[Package ORFhunteR version 1.2.0 Index]