print_interactions {OmnipathR} | R Documentation

## Print OmniPath interactions

### Description

Prints the interactions or enzyme-substrate relationships in a nice format.

### Usage

    print_interactions(interDF, writeRefs = FALSE)

### Arguments

`interDF` | data.frame with the interactions generated by any of the following functions: `import_omnipath_enzsub` `import_omnipath_interactions` `import_pathwayextra_interactions` `import_kinaseextra_interactions` `import_ligrecextra_interactions` `import_post_translational_interactions` `import_dorothea_interactions` `import_tf_target_interactions` `import_transcriptional_interactions` `import_mirnatarget_interactions` `import_all_interactions`
`writeRefs` | [FALSE] writes also the PubMed IDs if available

### Value

Returns 'NULL'.

### Examples

    enzsub <- import_omnipath_enzsub()
    print_interactions(head(enzsub))
    print_interactions(tail(enzsub), writeRefs = TRUE)
    print_interactions(
        dplyr::filter(
            enzsub,
            enzyme_genesymbol == 'MAP2K1',
            substrate_genesymbol == 'MAPK3'
        )
    )

    signor <- import_omnipath_interactions(resources = 'SIGNOR')
    print_interactions(head(signor))
    #            source interaction            target n_resources
    # 6 MAPK14 (Q16539)  ==( + )==> MAPKAPK2 (P49137)          23
    # 4  TRPM7 (Q96QT4)  ==( + )==>    ANXA1 (P04083)          10
    # 1  PRKG1 (Q13976)  ==( - )==>    TRPC3 (Q13507)           8
    # 2  PTPN1 (P18031)  ==( - )==>    TRPV6 (Q9H1D0)           6
    # 5 PRKACA (P17612)  ==( - )==>   MCOLN1 (Q9GZU1)           6
    # 3  RACK1 (P63244)  ==( - )==>    TRPM6 (Q9BX84)           2

[Package OmnipathR version 3.2.0 Index]