kegg_pathway_annotations {OmnipathR} | R Documentation

## Protein pathway annotations

### Description

Downloads all KEGG pathways and creates a table of protein-pathway annotations.

### Usage

    kegg_pathway_annotations(pathways = NULL)

### Arguments

`pathways` | A table of KEGG pathways as produced by `kegg_pathways_download`.

### Value

A data frame (tibble) with UniProt IDs and pathway names.

### See Also

`kegg_pathways_download`

### Examples

    kegg_pw_annot <- kegg_pathway_annotations()
    kegg_pw_annot
    # # A tibble: 7,341 x 4
    #    uniprot genesymbol pathway                pathway_id
    #    <chr>   <chr>      <chr>                  <chr>
    #  1 Q03113  GNA12      MAPK signaling pathway hsa04010
    #  2 Q9Y4G8  RAPGEF2    MAPK signaling pathway hsa04010
    #  3 Q13972  RASGRF1    MAPK signaling pathway hsa04010
    #  4 O95267  RASGRP1    MAPK signaling pathway hsa04010
    #  5 P62834  RAP1A      MAPK signaling pathway hsa04010
    # # . with 7,336 more rows

[Package OmnipathR version 3.2.0 Index]