inbiomap_download {OmnipathR} | R Documentation

## Downloads and preprocesses network data from InWeb InBioMap

### Description

Downloads the data by `inbiomap_raw`, extracts the UniProt IDs, Gene Symbols and scores and removes the irrelevant columns.

### Usage

    inbiomap_download(...)

### Arguments

`...` | Passed to `inbiomap_raw`.

### Value

A data frame (tibble) of interactions.

### See Also

`inbiomap_raw`

### Examples

    inbiomap_interactions <- inbiomap_download()
    inbiomap_interactions

    # # A tibble: 625,641 x 7
    #    uniprot_a uniprot_b genesymbol_a genesymbol_b inferred score1 score2
    #    <chr>     <chr>     <chr>        <chr>        <lgl>     <dbl>  <dbl>
    #  1 A0A5B9    P01892    TRBC2        HLA-A        FALSE     0.417 0.458
    #  2 A0AUZ9    Q96CV9    KANSL1L      OPTN         FALSE     0.155 0.0761
    #  3 A0AV02    P24941    SLC12A8      CDK2         TRUE      0.156 0.0783
    #  4 A0AV02    Q00526    SLC12A8      CDK3         TRUE      0.157 0.0821
    #  5 A0AV96    P0CG48    RBM47        UBC          FALSE     0.144 0.0494
    # # . with 625,631 more rows

[Package OmnipathR version 3.2.0 Index]