regnetwork_download {OmnipathR} | R Documentation

## Interactions from RegNetwork

### Description

Downloads transcriptional and post-transcriptional regulatory interactions from the RegNetwork database (http://www.regnetworkweb.org/). The information about effect signs (stimulation or inhibition), provided by `regnetwork_directions` are included in the result.

### Usage

    regnetwork_download(organism = "human")

### Arguments

`organism` | Character: either human or mouse.

### Value

Data frame with interactions.

### Examples

    regn_interactions <- regnetwork_download()
    regn_interactions
    # # A tibble: 372,778 x 7
    #    source_genesymb. source_entrez target_genesymb. target_entrez
    #    <chr>            <chr>         <chr>            <chr>
    #  1 USF1             7391          S100A6           6277
    #  2 USF1             7391          DUSP1            1843
    #  3 USF1             7391          C4A              720
    #  4 USF1             7391          ABCA1            19
    #  5 TP53             7157          TP73             7161
    # # . with 372,768 more rows, and 3 more variables: effect <dbl>,
    # #   source_type <chr>, target_type <chr>

[Package OmnipathR version 3.2.0 Index]