import_post_translational_interactions {OmnipathR} | R Documentation

## All post-translational interactions from OmniPath

### Description

Imports interactions from all post-translational datasets of OmniPath. The datasets are "omnipath", "kinaseextra", "pathwayextra" and "ligrecextra".

### Usage

    import_post_translational_interactions(
      resources = NULL,
      organism = 9606,
      exclude = NULL,
      references_by_resource = TRUE,
      ...
    )

### Arguments

`resources` | interactions not reported in these databases are removed. See `get_interaction_resources` for more information.
`organism` | Interactions are available for human, mouse and rat. Choose among: 9606 human (default), 10116 rat and 10090 Mouse
`exclude` | Character: datasets or resources to exclude.
`references_by_resource` | if FALSE, removes the resource name prefixes from the references (PubMed IDs); this way the information which reference comes from which resource will be lost and the PubMed IDs will be unique.
`...` | optional additional arguments

### Value

A dataframe containing post-translational interactions

### See Also

- `get_interaction_resources`

- `import_all_interactions`

- `interaction_graph`

- `print_interactions`

### Examples

    interactions <-
        import_post_translational_interactions(
            resources = c('BioGRID')
        )

[Package OmnipathR version 3.2.0 Index]