nichenet_gr_network_harmonizome {OmnipathR} | R Documentation

## NicheNet gene regulatory network from Harmonizome

### Description

Builds gene regulatory network prior knowledge for NicheNet using Harmonizome

### Usage

    nichenet_gr_network_harmonizome(
      datasets = c("cheappi", "encodetfppi", "jasparpwm", "transfac", "transfacpwm",
        "motifmap", "geotf", "geokinase", "geogene"),
      ...
    )

### Arguments

`datasets` | The datasets to use. For possible values please refer to default value and the Harmonizome webpage.
`...` | Ignored.

### Value

Data frame with gene regulatory interactions in NicheNet format.

### See Also

- `nichenet_gr_network`

- `harmonizome_download`

### Examples

    # use only JASPAR and TRANSFAC:
    hz_gr_network <- nichenet_gr_network_harmonizome(
        datasets = c('jasparpwm', 'transfac', 'transfacpwm')
    )

[Package OmnipathR version 3.2.0 Index]