regnetwork_directions {OmnipathR} | R Documentation

## Transcription factor effects from RegNetwork

### Description

Transcription factor effects from RegNetwork

### Usage

    regnetwork_directions(organism = "human")

### Arguments

`organism` | Character: either human or mouse.

### Value

A data frame (tibble) of TF-target interactions with effect signs.

### Examples

    regn_dir <- regnetwork_directions()
    regn_dir
    # # A tibble: 3,954 x 5
    #    source_genesymb. source_entrez target_genesymb. target_entrez
    #    <chr>            <chr>         <chr>            <chr>
    #  1 AHR              196           CDKN1B           1027
    #  2 APLNR            187           PIK3C3           5289
    #  3 APLNR            187           PIK3R4           30849
    #  4 AR               367           KLK3             354
    #  5 ARNT             405           ALDOA            226
    # # . with 3,944 more rows, and 1 more variable: effect <dbl>

[Package OmnipathR version 3.2.0 Index]