nichenet_gr_network_pathwaycommons {OmnipathR} | R Documentation

## NicheNet gene regulatory network from PathwayCommons

### Description

Builds gene regulation prior knowledge for NicheNet using PathwayCommons.

### Usage

    nichenet_gr_network_pathwaycommons(
      interaction_types = "controls-expression-of",
      ...
    )

### Arguments

`interaction_types` | Character vector with PathwayCommons interaction types. Please refer to the default value and the PathwayCommons webpage.
`...` | Ignored.

### Value

Data frame with gene regulatory interactions in NicheNet format.

### See Also

- `nichenet_gr_network`

- `pathwaycommons_download`

### Examples

    pc_gr_network <- nichenet_gr_network_pathwaycommons()

[Package OmnipathR version 3.2.0 Index]