tfcensus_download {OmnipathR} | R Documentation

## Downloads the list of transcription factors from TF census

### Description

Vaquerizas et al. published in 2009 a list of transcription factors. This function retrieves Supplementary Table 2 from the article (http://www.nature.com/nrg/journal/v10/n4/index.html).

### Usage

    tfcensus_download()

### Value

A data frame (tibble) listing transcription factors.

### Examples

    tfcensus <- tfcensus_download()
    tfcensus
    # # A tibble: 1,987 x 7
    #    Class `Ensembl ID` `IPI ID` `Interpro DBD` `Interpro DNA-b.
    #    <chr> <chr>        <chr>    <chr>          <chr>
    #  1 a     ENSG0000000. IPI0021. NA             IPR001289
    #  2 a     ENSG0000000. IPI0004. IPR000047;IPR. NA
    #  3 a     ENSG0000000. IPI0001. IPR001356;IPR. NA
    #  4 a     ENSG0000000. IPI0029. IPR000910;IPR. NA
    #  5 a     ENSG0000000. IPI0001. IPR007087;IPR. IPR006794
    # # . with 1,977 more rows, and 2 more variables: `HGNC symbol` <chr>,
    # # `Tissue-specificity` <chr>

[Package OmnipathR version 3.2.0 Index]