annotation_categories {OmnipathR} | R Documentation

## Annotation categories and resources

### Description

A full list of annotation resources, keys and values.

### Usage

    annotation_categories()

### Value

A data frame with resource names, annotation key labels and for each key all possible values.

### Examples

    annot_cat <- annotation_categories()
    annot_cat
    # # A tibble: 46,307 x 3
    #    source           label    value
    #    <chr>            <chr>    <chr>
    #  1 connectomeDB2020 role     ligand
    #  2 connectomeDB2020 role     receptor
    #  3 connectomeDB2020 location ECM
    #  4 connectomeDB2020 location plasma membrane
    #  5 connectomeDB2020 location secreted
    #  6 KEGG-PC          pathway  Alanine, aspartate and glutamate metabolism
    #  7 KEGG-PC          pathway  Amino sugar and nucleotide sugar metabolism
    #  8 KEGG-PC          pathway  Aminoacyl-tRNA biosynthesis
    #  9 KEGG-PC          pathway  Arachidonic acid metabolism
    # 10 KEGG-PC          pathway  Arginine and proline metabolism

[Package OmnipathR version 3.2.0 Index]