bioplex2 {OmnipathR} | R Documentation

## Downloads the BioPlex version 2.0 interaction dataset

### Description

This dataset contains ~56,000 interactions detected in HEK293T cells using 5,891 baits. More details at https://bioplex.hms.harvard.edu/interactions.php

### Usage

    bioplex2()

### Value

Data frame (tibble) with interactions.

### See Also

- `bioplex1`

- `bioplex3`

- `bioplex_hct116_1`

- `bioplex_all`

### Examples

    bioplex_interactions <- bioplex2()
    nrow(bioplex_interactions)
    # [1] 56553
    colnames(bioplex_interactions)
    # [1] "GeneA"         "GeneB"        "UniprotA"   "UniprotB"
    # [5] "SymbolA"       "SymbolB"      "p_wrong"    "p_no_interaction"
    # [9] "p_interaction"

[Package OmnipathR version 3.2.0 Index]