nichenet_lr_network_ramilowski {OmnipathR} | R Documentation

## Ligand-receptor network from Ramilowski 2015

### Description

Downloads ligand-receptor interactions from Supplementary Table 2 of the paper 'A draft network of ligand–receptor-mediated multicellular signalling in human' (Ramilowski et al. 2015, https://www.nature.com/articles/ncomms8866). It converts the downloaded table to a format suitable for NicheNet.

### Usage

    nichenet_lr_network_ramilowski(
      evidences = c("literature supported", "putative")
    )

### Arguments

`evidences` | Character: evidence types, "literature supported", "putative" or both.

### Value

Data frame with ligand-receptor interactions in NicheNet format.

### See Also

- `nichenet_lr_network`

- `ramilowski_download`

### Examples

    # use only the literature supported data:
    rami_lr_network <- nichenet_lr_network_ramilowski(
        evidences = 'literature supported'
    )

[Package OmnipathR version 3.2.0 Index]