bioplex_hct116_1 {OmnipathR} | R Documentation

## Downloads the BioPlex HCT116 version 1.0 interaction dataset

### Description

This dataset contains ~71,000 interactions detected in HCT116 cells using 5,522 baits. More details at https://bioplex.hms.harvard.edu/interactions.php.

### Usage

    bioplex_hct116_1()

### Value

Data frame (tibble) with interactions.

### See Also

- `bioplex1`

- `bioplex2`

- `bioplex3`

- `bioplex_all`

### Examples

    bioplex_interactions <- bioplex_hct116_1()
    nrow(bioplex_interactions)
    # [1] 70966
    colnames(bioplex_interactions)
    # [1] "GeneA"         "GeneB"        "UniprotA"   "UniprotB"
    # [5] "SymbolA"       "SymbolB"      "p_wrong"    "p_no_interaction"
    # [9] "p_interaction"

[Package OmnipathR version 3.2.0 Index]