nichenet_signaling_network_cpdb {OmnipathR} | R Documentation

## Builds signaling network for NicheNet using ConsensusPathDB

### Description

Builds signaling network prior knowledge using ConsensusPathDB (CPDB) data. Note, the interactions from CPDB are not directed and many of them comes from complex expansion. Find out more at http://cpdb.molgen.mpg.de/.

### Usage

    nichenet_signaling_network_cpdb(...)

### Arguments

`...` | Passed to `consensuspathdb_download`.

### Value

A network data frame (tibble) with signaling interactions suitable for use with NicheNet.

### See Also

- `nichenet_signaling_network`

- `consensuspathdb_download`

### Examples

    # use some parameters stricter than default:
    cpdb_signaling_network <- nichenet_signaling_network_cpdb(
        complex_max_size = 2,
        min_score = .99
    )

[Package OmnipathR version 3.2.0 Index]