preppi_filter {OmnipathR} | R Documentation

## Filter PrePPI interactions by scores

### Description

Filter PrePPI interactions by scores

### Usage

    preppi_filter(data, ..., .op = "&")

### Arguments

`data` | A data frame of PrePPI interactions as provided by `preppi_download`.
`...` | Minimum values for the scores. The available scores are: str, protpep, str_max, red, ort, phy, coexp, go, total, exp and final. See more about the scores at `preppi_download`.
`.op` | The operator to combine the scores with: either `'&'` or `'|'`. With the former, only records where all scores are above the threshold will be kept; with the latter, records where at least one score is above its threshold will be kept.

### Value

The input data frame (tibble) filtered by the score thresholds.

### See Also

`preppi_download`

### Examples

    preppi <- preppi_download()
    preppi_filtered <- preppi_filter(preppi, red = 10, str = 4.5, ort = 1)
    nrow(preppi_filtered)
    # [1] 8443

[Package OmnipathR version 3.2.0 Index]