predictClasses,CohortList,GeneFuModel-method {PDATK} | R Documentation

## Use a Gene Signature Based Prediciton Model from the `genefu` Package to Predict Signature Scores for Each Sample

### Description

Use a Gene Signature Based Prediciton Model from the `genefu` Package to Predict Signature Scores for Each Sample

### Usage

    ## S4 method for signature 'CohortList,GeneFuModel'
    predictClasses(object, model, ..., annot = NA)

### Arguments

`object` | A `CohortList` with `SurvivalExperiment`s to predict classes for.
`model` | A trained `GeneFuModel` object.
`...` | Fall through parameters to `genefu::sig.score`.
`annot` | The `annot` parameter passed to `genefu::sig.score`. Defaults to NA, which assumes your assay rowname match the gene labels in the model.

### Value

A `CohortList` with the model predictions in the colData slot as genefu_score for each `SurvivalExperiment`, and the model in the metadata as predictionModel.

[Package PDATK version 1.2.0 Index]