PFPRefnet-class {PFP} | R Documentation

## `PFPRefnet-class`

### Description

An S4 object for storing PFP reference network information.

### Value

a object of PFPRefnet class

### Slots

`network,`

  object of graphNEL list represents the basic networks.

`net_info,`

  a dataframe which contains the index, id, name, group and species.It contains the information of the pathway networks, whose row number is the same with network.

  #'@section method:

  - network, `signature(object = "PFPRefnet")`: extract networks of PFPRefnet

  - net_info, `signature(object = "PFPRefnet")`: extract net information of PFPRefnet

  - group, `signature(object = "PFPRefnet")`: extract group information

  - net_names, `signature(object = "PFPRefnet")`: the names of basic networks

  - subnet, `signature(object = "PFPRefnet")`: subset basic networks, e.g. a group of a networks or some networks of some given groups

  - show_net, `signature(object = "PFPRefnet")`: display methods for S4 classes PFPRefnet, see also `show_net`

### See Also

`network-methods`, `net_info-methods`, `group-methods`, `net_names-methods`, `subnet-methods`, `show_net-methods`,

### Examples

    data(PFPRefnet_hsa)
    PFPRefnet_hsa

[Package PFP version 1.2.0 Index]