PICS {PICS} | R Documentation

## Estimation of binding site positions

### Description

This object contains Estimation of binding site positions and has the following slots: segReadsList, dataType.

### Usage

    PICS(
      segReadsList,
      dataType = NULL,
      paraEM = NULL,
      paraPrior = NULL,
      nCores = 1
    )

### Arguments

`segReadsList` | This object contains segmentation of Genome
`dataType` | A `character`. The type of data you are processing: 'TF' for transcription factor.
`paraEM` | A `list` of parameters for the EM algorithm as returned by the `setParaEM` function. The default parameters should be good enough for most usages.
`paraPrior` | A `list` of parameters for the priors as returned by `setParaPrior`.
`nCores` | An `integer`. The number of cores that should be used in parallel by the function.

### Value

An object of class `picsList` containing the estimated binding site positions.

[Package PICS version 2.38.0 Index]