PeacoQCHeatmap {PeacoQC} | R Documentation

## Make overview heatmap of quality control analysis

### Description

`PeacoQCHeatmap` will make a heatmap to display all the results generated by `PeacoQC`. It will include the percentages of measurements that are removed in total, by the IT method and by the MAD method. It will also show the parameters that were used during the quality control.

### Usage

    PeacoQCHeatmap(report_location, show_values=TRUE, show_row_names=TRUE,
    latest_tests=FALSE, title="PeacoQC report", ...)

### Arguments

`report_location` | The path to the PeacoQC report generated by `PeacoQC`.
`show_values` | If set to TRUE, the percentages of removed values will be displayed on the heatmap. Default is TRUE.
`show_row_names` | If set to FALSE, the filenames will not be displayed on the heatmap. Default is TRUE.
`latest_tests` | If this is set to TRUE, only the latest quality control run will be displayed in the heatmap. Default is FALSE.
`title` | The title that should be given to the heatmap. Default is "PeacoQC_report".
`...` | Extra parameters to be given to the `Heatmap` function (eg. row_split)

### Value

This function returns nothing but generates a heatmap that can be saved as pdf or png

### Examples

    # Find path to PeacoQC report
    location <- system.file("extdata", "PeacoQC_report.txt", package="PeacoQC")

    # Make heatmap overview of quality control run
    PeacoQCHeatmap(report_location=location)

    # Make heatmap with only the runs of the last test
    PeacoQCHeatmap(report_location=location, latest_tests=TRUE)

    # Make heatmap with row annotation
    PeacoQCHeatmap(report_location=location,
                  row_split=c(rep("r1",7), rep("r2", 55)))

[Package PeacoQC version 1.4.0 Index]