thrTable {PoDCall} | R Documentation

## PoDCall Example Threshold Table

### Description

A `data.frame` that contains the results of running PodCall with the amplitude data files included in the package. For testing and running of examples. See vignette for more detailed description about columns.

### Usage

    data("thrTable")

### Format

A `data.frame` with 13 columns, which are:

sample_id

  Sample ID

thr_target

  Threshold channel 1 (target assay)

thr_ctrl

  Threshold channel 2 (control assay)

pos_dr_target

  Positive droplets target

pos_dr_ctrl

  Positive droplets control

tot_droplets

  Total droplets

c_target

  Concentration target

c_ctrl

  Concentration control

c_norm_4Plex

  Normalized concentration based on 4Plex control

c_norm_sg

  Normalized concentration based on single gene control

q

  Parameter Q for calling outliers

target_assay

  Target assay

ctrl_assay

  Control assay

ref_well

  Reference well used to set threshold

### Source

In-house cell-line experiment.

[Package PoDCall version 1.2.0 Index]