podcallScatterplot {PoDCall} | R Documentation

## podcallScatterplot

### Description

Function that make a scatterplot of amplitude values from one channel of a well with threshold indicated by a horizontal line.

### Usage

    podcallScatterplot(channelData, thr, channel, plotId = NULL)

### Arguments

`channelData` | Amplitude values from one channel of a well.
`thr` | The threshold set for `channel` of a well.
`channel` | The channel the amplitude values belong to.
`plotId` | A character string with title for the plot

### Value

A scatterplot of all droplets from a channel from a well with a line indicating the set threshold.

### Examples

    # Get path to data
    path <- system.file("extdata", "Amplitudes/", package="PoDCall")

    # Read in data
    data <- importAmplitudeData(path)
    data("thrTable")

    # Get name of first list element and use as well ID
    well_id <- names(data)[1]

    # Set channel to plot
    channel <- 1

    # Get threshold for well_id and channel 1 (see ?thrTable)
    thr <- thrTable[well_id, "thr_target"]

    scatterplot <- podcallScatterplot(channelData=data[[well_id]][[channel]],
                                    thr,
                                    channel)

[Package PoDCall version 1.2.0 Index]