cpObj {PrecisionTrialDrawer} | R Documentation

## Example of a cancer panel

### Description

A CancerPanel object used in PrecisionTrailDrawer

### Usage

    data(cpObj)

### Format

A CancerPanel object with 3 slots and data from every cBioportal study on lung adenocarcinoma (LUAD) and breast carcinoma (BRCA):

`arguments`:

  Object of class `"list"` containing panel contents information. it id filled at the panel construction.

`dataFull`:

  Object of class `"list"` containing a slot for every alteration type. it is filled with getAlterations method and contains all the alterations for all the genes in the panel and every tumor type requested.

`dataSubset`:

  Object of class `"list"` containing a slot for every alteration type. it is filled with subsetAlterations method and reports all the alterations for every requested specific alteration. All slots have the same data.frame layout.

### Source

data origin for BRCA and LUAD

### Examples

    #Load cpObj and show its structure
    data(cpObj)
    str(cpObj)

[Package PrecisionTrialDrawer version 1.10.0 Index]