PureCN-defunct {PureCN} | R Documentation

## Defunct functions in package ‘PureCN’

### Description

These functions are defunct and no longer available.

### Details

The following functions are defunct; use the replacement indicated below:

- autoCurateResults: no replacement

- calculateGCContentByInterval: `preprocessIntervals`

- calculateIntervalWeights: `createNormalDatabase`

- createExonWeightFile: `createNormalDatabase`

- createSNPBlacklist: `setMappingBiasVcf`

- createTargetWeights: `createNormalDatabase`

- filterTargets: `filterIntervals`

- findBestNormal: `calculateTangentNormal`

- getDiploid: no replacement

- plotBestNormal: no replacement

- readCoverageGatk: `readCoverageFile`

[Package PureCN version 2.0.2 Index]