QDNAseqReadCounts {QDNAseq} | R Documentation

## Container for QDNAseq read count data

### Description

Container for QDNAseq read count data

### Assay data elements

An object of this class contains (a subset) the following elements:

`counts`

  (`numeric`) Binned read counts as non-negative integers in \{0,1,2,...\}. An object with only this field is created by `binReadCounts`().

`fit`

  (`numeric`; optional) Loess fit of "count" signals as doubles. Normally, these should all be positive values, but a small number of edge case bins might contain negatives, especially when fitting unfiltered data. This element is added after calling `estimateCorrection`().

### Missing values

The bin data (assay data) may contain missing values.

### Author(s)

Ilari Scheinin

[Package QDNAseq version 1.30.0 Index]