Renyi {QSutils} | R Documentation

## Rényi profiles

### Description

Functions to compute the Rényi entropy given a vector of counts `RenyiProfile` computes the Rényi number for a set of exponents.

### Usage

    Renyi(w, q)
    RenyiProfile(w, q = NULL)

### Arguments

`w` | Vector of observed counts or frequencies.
`q` | Exponent. A single value for `Renyi`, a vector of values or NULL for `RenyiProfile`.

### Value

A single value for `Renyi`. A data frame with exponents and entropies for `RenyiProfile`.

### Author(s)

Mercedes Guerrero-Murillo and Josep Gregori

### References

Gregori J, Perales C, Rodriguez-Frias F, Esteban JI, Quer J, Domingo E. Viral quasispecies complexity measures. Virology. 2016 Jun;493:227-37. doi: 10.1016/j.virol.2016.03.017. Epub 2016 Apr 6. Review. PubMed PMID: 27060566.

Gregori J, Salicrú M, Domingo E, Sanchez A, Esteban JI, Rodríguez-Frías F, Quer J. Inference with viral quasispecies diversity indices: clonal and NGS approaches. Bioinformatics. 2014 Apr 15;30(8):1104-1111. Epub 2014 Jan 2. PubMed PMID: 24389655.

Pavoine, S. (2005). Méthodes statistiques pour la mesure de la biodiversité. UMR CNRS 5558 «Biométrie et Biologie Evolutive».

### See Also

`Hill`, `HCq`

### Examples

    # A vector of observed counts.
    nr<-c(464, 62, 39, 27, 37, 16, 33, 54, 248, 20)

    Renyi(nr,2)

    RenyiProfile(nr,c(0:4,Inf))

    RenyiProfile(nr)

[Package QSutils version 1.12.0 Index]