8be9da8904f33ad0b33aa0c36d48d296 *CITATION
731c8cb2537f9196e83a122adfe14d6e *DESCRIPTION
8b674ad9f7062570a33356049c6a7810 *INDEX
d0b9f24e83829f76975372e96a9d9641 *Meta/Rd.rds
34883f6748321762d545df9dc9627dbb *Meta/data.rds
8503e676975364d771072956cdbca633 *Meta/features.rds
44f94269e10fa1339e78a39979490fcf *Meta/hsearch.rds
733d6b8a42d6ae516d50e7ac089a02eb *Meta/links.rds
fe55c03c61d78cb88f9361a95c2fd06a *Meta/nsInfo.rds
28ac6e1ad339056a6c921e517e652cad *Meta/package.rds
db5bae2bbd3482a04ccd42ffeba904e5 *Meta/vignette.rds
2d9bca61be0f296821cf80724a28737a *NAMESPACE
fd12a368d88a6c0b238c80bfce0deb7a *NEWS
d6c68f1fe41ced6e98a766a3757313da *R/R3CPET
d234094fd5b96fd05ee3cf54325b6b90 *R/R3CPET.rdb
669dc94920dfa14d4c7b2c4445a4a6ec *R/R3CPET.rdx
c45d760c23d6b5183c5de857710b8994 *data/Biogrid.RData
f35026b14c326177c028eefdbe23ebee *data/HPRD.RData
b92dce55ce53f55c1a6da9d8a9e938dc *data/RPKMS.RData
09fd09f15670c8d713d7072e618bdff0 *data/chromosoms.RData
e56758a9803ecae91ba6a8627bff9e58 *data/datalist
4e561a760cbba7cada882ab7fba497f7 *data/geneLocations.RData
52dae72e85587ccf975ce3b800bd1aaa *doc/R3CPET.R
8191d7562c1fd15a5cb27235d2cf054e *doc/R3CPET.Rnw
6f49807fbc5af36408a6f97a42efa66c *doc/R3CPET.pdf
07b0383481f7a67702e2a46ea1882488 *doc/index.html
6531b13f33921c74b9b58f7bca8cf7d5 *example/HepG2_TF.txt.gz
206cc5f59d538df4032e3feb4b80d4d1 *example/HepG2_centered.bed
27aad1807238d539f9038cf4b37376f8 *example/HepG2_interactions.txt
5fcb9dc200c6ef9d6ec62edc7e2be816 *example/hlda.RData
bbb906f9eefef006ba727e06ed6784ff *example/nets.RData
e37adc727fd79cd41ca37e5e282774f7 *help/AnIndex
5b490579d89eb703f016951b72b9ce83 *help/Biogrid.html
cb533b5f5568da3e36fc4372c84ffcc1 *help/ChiapetExperimentData-class.html
cb533b5f5568da3e36fc4372c84ffcc1 *help/ChiapetExperimentData.html
89aec1ca07607521e6ed78cbbcc3913b *help/ChromMaintainers-class.html
89aec1ca07607521e6ed78cbbcc3913b *help/ChromMaintainers.html
7cd01d9a6bcde33bcfa2d55d14e4ae3c *help/CreateCenteredBED+2Ccharacter-method.html
7cd01d9a6bcde33bcfa2d55d14e4ae3c *help/CreateCenteredBED-methods.html
7cd01d9a6bcde33bcfa2d55d14e4ae3c *help/CreateCenteredBED.html
64592bf7c45b6931f4b97d242fc38a7f *help/EnsemblToHGNC.html
f0ab8244fa142ef1ccb65c41abcde28a *help/EntrezToHGNC.html
50c9d08aee8231ce8c2374ab44d5ab4a *help/GOEnrich-methods.html
50c9d08aee8231ce8c2374ab44d5ab4a *help/GOEnrich.folder+2Ccharacter-method.html
50c9d08aee8231ce8c2374ab44d5ab4a *help/GOEnrich.folder-methods.html
50c9d08aee8231ce8c2374ab44d5ab4a *help/GOEnrich.folder.html
50c9d08aee8231ce8c2374ab44d5ab4a *help/GOEnrich.networks+2CChromMaintainers-method.html
50c9d08aee8231ce8c2374ab44d5ab4a *help/GOEnrich.networks-methods.html
50c9d08aee8231ce8c2374ab44d5ab4a *help/GOEnrich.networks.html
89aec1ca07607521e6ed78cbbcc3913b *help/GenerateGmlNetworks+2CChromMaintainers-method.html
89aec1ca07607521e6ed78cbbcc3913b *help/GenerateGmlNetworks-methods.html
89aec1ca07607521e6ed78cbbcc3913b *help/GenerateGmlNetworks.html
6d9325075ec70db536d2be8a1310ad0a *help/GenerateNetworks+2CChromMaintainers-method.html
6d9325075ec70db536d2be8a1310ad0a *help/GenerateNetworks-methods.html
6d9325075ec70db536d2be8a1310ad0a *help/GenerateNetworks.html
b103e92dc7465a2a5a04883260f53daf *help/HLDAResult-class.html
b103e92dc7465a2a5a04883260f53daf *help/HLDAResult.html
29f8cd21da79bd84277ba891141672a0 *help/HPRD.html
b3528a8b7cb2f41fba74c50aa4c164c6 *help/InferNetworks+2CNetworkCollection-method.html
b3528a8b7cb2f41fba74c50aa4c164c6 *help/InferNetworks-methods.html
b3528a8b7cb2f41fba74c50aa4c164c6 *help/InferNetworks.html
483ff7836b77619b1b16058729431edc *help/NetworkCollection-class.html
483ff7836b77619b1b16058729431edc *help/NetworkCollection.html
5b490579d89eb703f016951b72b9ce83 *help/PPI.Biogrid.html
29f8cd21da79bd84277ba891141672a0 *help/PPI.HPRD.html
997c7cece0bb29bddb3cee013e3e9d2a *help/PrepareData+2Ccharacter+2Ccharacter+2Clogical-method.html
997c7cece0bb29bddb3cee013e3e9d2a *help/PrepareData-methods.html
997c7cece0bb29bddb3cee013e3e9d2a *help/PrepareData.html
5b0e95736674a7f231e9ac63eb505b60 *help/R3CPET-package.html
5b0e95736674a7f231e9ac63eb505b60 *help/R3CPET.html
e11649000ccd97d57809f1daff9fe0af *help/R3CPET.rdb
c4eff8cc89c0010e1dcc570a6ef3c778 *help/R3CPET.rdx
078846bf10aa1d45522e5d78e494e412 *help/RPKMS.html
483ff7836b77619b1b16058729431edc *help/TF+2CNetworkCollection-method.html
483ff7836b77619b1b16058729431edc *help/TF.html
9b77c0b4a44bd150c04e478bcccd5d04 *help/aliases.rds
a4a262f95e48d862291d46e85c3e40ec *help/annotateExpression+2CChromMaintainers+2Cdata.frame-method.html
a4a262f95e48d862291d46e85c3e40ec *help/annotateExpression-methods.html
a4a262f95e48d862291d46e85c3e40ec *help/annotateExpression.html
b103e92dc7465a2a5a04883260f53daf *help/betas+2CHLDAResult-method.html
b103e92dc7465a2a5a04883260f53daf *help/betas-methods.html
b103e92dc7465a2a5a04883260f53daf *help/betas.html
b64606ab2c56850e09bf0ba7c8dbec91 *help/buildNetworks+2CChiapetExperimentData-method.html
b64606ab2c56850e09bf0ba7c8dbec91 *help/buildNetworks-methods.html
b64606ab2c56850e09bf0ba7c8dbec91 *help/buildNetworks.html
9e9853bb304364782bb47d6c829f6937 *help/chromosoms.html
a1b92d91319a268faff2fdba796a60cc *help/cluesOrSota-class.html
73ba46d4b186d1dd8bcfb03cb39657b6 *help/clusterInteractions+2CChromMaintainers-method.html
73ba46d4b186d1dd8bcfb03cb39657b6 *help/clusterInteractions-methods.html
73ba46d4b186d1dd8bcfb03cb39657b6 *help/clusterInteractions.html
c0618867aaefde5643d4d626ef9df70c *help/createIndexes+2CChiapetExperimentData-method.html
c0618867aaefde5643d4d626ef9df70c *help/createIndexes-methods.html
c0618867aaefde5643d4d626ef9df70c *help/createIndexes.html
2595a4e912544af3857037fb488f69ee *help/createServer+2CChiapetExperimentData+2CNetworkCollection+2CChromMaintainers-method.html
2595a4e912544af3857037fb488f69ee *help/createServer-methods.html
2595a4e912544af3857037fb488f69ee *help/createServer.html
b103e92dc7465a2a5a04883260f53daf *help/docPerTopic+2CHLDAResult-method.html
b103e92dc7465a2a5a04883260f53daf *help/docPerTopic-methods.html
b103e92dc7465a2a5a04883260f53daf *help/docPerTopic.html
7ad1fb389a96d36f7a274d0d6ced967b *help/geneLocations.html
7ad1fb389a96d36f7a274d0d6ced967b *help/geneLocations.nucleus.html
89aec1ca07607521e6ed78cbbcc3913b *help/getClusters+2CChromMaintainers-method.html
89aec1ca07607521e6ed78cbbcc3913b *help/getClusters-methods.html
89aec1ca07607521e6ed78cbbcc3913b *help/getClusters.html
351616a28483de6ddaff615125f4a44b *help/getRegionsInNetwork+2CChromMaintainers+2CChiapetExperimentData+2Cnumeric-method.html
351616a28483de6ddaff615125f4a44b *help/getRegionsInNetwork-methods.html
351616a28483de6ddaff615125f4a44b *help/getRegionsInNetwork.html
851159b8fc94e10b3ed727a545f13a66 *help/getRegionsIncluster+2CChromMaintainers+2CChiapetExperimentData+2Cnumeric-method.html
851159b8fc94e10b3ed727a545f13a66 *help/getRegionsIncluster-methods.html
851159b8fc94e10b3ed727a545f13a66 *help/getRegionsIncluster.html
941500d3c5fcdfe5f580c2b4c250b9a2 *help/loadPETs+2CChiapetExperimentData+2Ccharacter-method.html
941500d3c5fcdfe5f580c2b4c250b9a2 *help/loadPETs-methods.html
941500d3c5fcdfe5f580c2b4c250b9a2 *help/loadPETs.html
fe1e6a69b104227b8720280381eabefa *help/loadPPI+2CChiapetExperimentData-method.html
fe1e6a69b104227b8720280381eabefa *help/loadPPI-methods.html
fe1e6a69b104227b8720280381eabefa *help/loadPPI.html
23e7bb03885ab60ba1d5e1ac565337cc *help/loadTFBS+2CChiapetExperimentData+2Ccharacter-method.html
23e7bb03885ab60ba1d5e1ac565337cc *help/loadTFBS+2CChiapetExperimentData.html
23e7bb03885ab60ba1d5e1ac565337cc *help/loadTFBS-methods.html
23e7bb03885ab60ba1d5e1ac565337cc *help/loadTFBS.html
89aec1ca07607521e6ed78cbbcc3913b *help/networks+2CChromMaintainers-method.html
483ff7836b77619b1b16058729431edc *help/networks+2CNetworkCollection-method.html
483ff7836b77619b1b16058729431edc *help/networks.html
9d281bc0d54faa1d5d912f147d197405 *help/outputGenesPerClusterToDir+2CChromMaintainers+2CChiapetExperimentData-method.html
9d281bc0d54faa1d5d912f147d197405 *help/outputGenesPerClusterToDir-methods.html
9d281bc0d54faa1d5d912f147d197405 *help/outputGenesPerClusterToDir.html
bb37b6c2cc7838b547fbb9e3d4b23124 *help/outputGenesPerNetworkToDir+2CChromMaintainers+2CChiapetExperimentData-method.html
bb37b6c2cc7838b547fbb9e3d4b23124 *help/outputGenesPerNetworkToDir-methods.html
bb37b6c2cc7838b547fbb9e3d4b23124 *help/outputGenesPerNetworkToDir.html
f84b8dbfb2c0c55c619f2a8a4b13f6bd *help/paths.rds
cb533b5f5568da3e36fc4372c84ffcc1 *help/pet+2CChiapetExperimentData-method.html
cb533b5f5568da3e36fc4372c84ffcc1 *help/pet+3C-+2CChiapetExperimentData-method.html
cb533b5f5568da3e36fc4372c84ffcc1 *help/pet+3C-.html
cb533b5f5568da3e36fc4372c84ffcc1 *help/pet-methods.html
cb533b5f5568da3e36fc4372c84ffcc1 *help/pet.html
35d5973165bbb1e974efb7eb1cbed0bc *help/plot3CPETRes+2CChromMaintainers-method.html
35d5973165bbb1e974efb7eb1cbed0bc *help/plot3CPETRes-methods.html
35d5973165bbb1e974efb7eb1cbed0bc *help/plot3CPETRes.html
35d5973165bbb1e974efb7eb1cbed0bc *help/plotRes-methods.html
a575de0df352120ccfd018de73279d4b *help/plotTrack+2CChiapetExperimentData+2CGRanges-method.html
a575de0df352120ccfd018de73279d4b *help/plotTrack-methods.html
a575de0df352120ccfd018de73279d4b *help/plotTrack.html
cb533b5f5568da3e36fc4372c84ffcc1 *help/ppi+2CChiapetExperimentData-method.html
cb533b5f5568da3e36fc4372c84ffcc1 *help/ppi+3C-+2CChiapetExperimentData-method.html
cb533b5f5568da3e36fc4372c84ffcc1 *help/ppi+3C-.html
cb533b5f5568da3e36fc4372c84ffcc1 *help/ppi-methods.html
cb533b5f5568da3e36fc4372c84ffcc1 *help/ppi.html
483ff7836b77619b1b16058729431edc *help/sizes+2CNetworkCollection-method.html
483ff7836b77619b1b16058729431edc *help/sizes.html
cb533b5f5568da3e36fc4372c84ffcc1 *help/tfbs+2CChiapetExperimentData-method.html
cb533b5f5568da3e36fc4372c84ffcc1 *help/tfbs+3C-+2CChiapetExperimentData-method.html
cb533b5f5568da3e36fc4372c84ffcc1 *help/tfbs+3C-.html
cb533b5f5568da3e36fc4372c84ffcc1 *help/tfbs-methods.html
cb533b5f5568da3e36fc4372c84ffcc1 *help/tfbs.html
89aec1ca07607521e6ed78cbbcc3913b *help/topEdges+2CChromMaintainers-method.html
89aec1ca07607521e6ed78cbbcc3913b *help/topEdges-methods.html
89aec1ca07607521e6ed78cbbcc3913b *help/topEdges.html
89aec1ca07607521e6ed78cbbcc3913b *help/topNodes+2CChromMaintainers-method.html
89aec1ca07607521e6ed78cbbcc3913b *help/topNodes-methods.html
89aec1ca07607521e6ed78cbbcc3913b *help/topNodes.html
6e164a20c1f157cb0a1f54bef93ce9cc *help/updateResults+2CChromMaintainers+2CNetworkCollection+2Cnumeric-method.html
6e164a20c1f157cb0a1f54bef93ce9cc *help/updateResults-methods.html
6e164a20c1f157cb0a1f54bef93ce9cc *help/updateResults.html
5727d50c2a17e8280f68c8c44ffb1bd4 *help/visualizeCircos+2CChromMaintainers+2CChiapetExperimentData+2Cnumeric-method.html
5727d50c2a17e8280f68c8c44ffb1bd4 *help/visualizeCircos-methods.html
5727d50c2a17e8280f68c8c44ffb1bd4 *help/visualizeCircos.html
fc9b4023463c2dbf12570bbd31b66060 *help/visualizeInteractions+2CChiapetExperimentData+2CGRanges-method.html
fc9b4023463c2dbf12570bbd31b66060 *help/visualizeInteractions-methods.html
fc9b4023463c2dbf12570bbd31b66060 *help/visualizeInteractions.html
b103e92dc7465a2a5a04883260f53daf *help/wordsPerTopic+2CHLDAResult-method.html
b103e92dc7465a2a5a04883260f53daf *help/wordsPerTopic-methods.html
b103e92dc7465a2a5a04883260f53daf *help/wordsPerTopic.html
55d6a91574afa690dbcb275c0bc19530 *html/00Index.html
a04757d100ee37609b57c738c0424d09 *html/Biogrid.html
38cc1ccfafd01b1dd528861e885e10bc *html/ChiapetExperimentData-class.html
1ec4e1eaee39cd4fb69f53a9ab3485b0 *html/ChromMaintainers-class.html
5c7f9616a5ead973c4cc289dd7fde18f *html/CreateCenteredBED-methods.html
397431706b6ba15920a2a2b23d174822 *html/EnsemblToHGNC.html
395c638de1f4d218caf6b9660773d055 *html/EntrezToHGNC.html
f8958c42887bf53cf41f7e58fdd5d2ba *html/GOEnrich-methods.html
324ff1ad8204100a7d5009c5a8759700 *html/GenerateNetworks-methods.html
b2a8adb8b5749ef81e75304cf8f5490a *html/HLDAResult-class.html
2943eae0dfb5003b77ee5a51164dc9aa *html/HPRD.html
15a81f36d0ad220ae4ce912ee7e5a992 *html/InferNetworks-methods.html
e4a26a16ead86bf6322b0ff9cd1a2c30 *html/NetworkCollection-class.html
8f1e4b492c71e24e5d7d73dc65a2bd81 *html/PrepareData-methods.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
094d3028e4e2f0e70663f128d5190464 *html/R3CPET-package.html
4495f247baa3562775febb456d4edc46 *html/RPKMS.html
88f87a8ce213a2721cd8b0e94aacc4fc *html/annotateExpression-methods.html
1a9008958d2c199d4d578131a73e7920 *html/buildNetworks-methods.html
d2d5f2a90fa4917a9724333e8d23f32c *html/chromosoms.html
156f1eedb0d26071633014917fac0df7 *html/cluesOrSota-class.html
63ed275a2ee4f75f6874b9db2698e377 *html/clusterInteractions-methods.html
97fd435d41d5d6cacd136034b7dcb888 *html/createIndexes-methods.html
304e69c08a19d5a3c2451752022e6c30 *html/createServer-methods.html
1ebd22bde0db954812571923abd1c11c *html/geneLocations.html
9bd2ad2ab676736a827bba2374fcf894 *html/getRegionsInNetwork-methods.html
9d71d2f636ecd15b8ec006e850e902f0 *html/getRegionsIncluster-methods.html
6c60957cee5057e6a0f5ca8061b3e513 *html/loadPETs-methods.html
30c3ae49eedeab6641e19e3f5c44912a *html/loadPPI-methods.html
1f69b429a63311a6e323bf33e88e5efd *html/loadTFBS-methods.html
c58ac21d1b40d5ac036ca16779125dc9 *html/outputGenesPerClusterToDir-methods.html
afebcf56e0286cec0de4940fb3fd68af *html/outputGenesPerNetworkToDir-methods.html
627904e2190ca083f6560f9801854ae2 *html/plotRes-methods.html
385079b5f9d90505481283835d43eb63 *html/plotTrack.html
64ba8b7b881784b18f82d38873730f11 *html/updateResults-methods.html
7cd142426fcb3577b6392ad6782d9582 *html/visualizeCircos-methods.html
d43be1451904d241caaab6e730a7ca08 *html/visualizeInteractions-methods.html
e750107e0f944a20d5c4905ab8099eea *libs/i386/R3CPET.dll
9909e7d3cb2506ae9cc61445d01fd677 *libs/x64/R3CPET.dll
a7816a5973d4234a96b6e7eb987b4173 *www/d3.min.js
13f63c9fb710f813ba096b43d131debe *www/graph.js
7c26c349ee1933ee9ac91e7a32190516 *www/server.R
7caec109ad736a5c409d2e0d80ad53ab *www/ui.R
