PlotPseudoTime {RCSL} | R Documentation

## Infer the pseudo-temporal ordering between the cell types using the distance from a cell type to the predefined starting cell type.

### Description

Infer the pseudo-temporal ordering between the cell types using the distance from a cell type to the predefined starting cell type.

### Usage

    PlotPseudoTime(
      S,
      TrueLabel,
      startPoint,
      fontSize = 12,
      dataName = "",
      sim = TRUE
    )

### Arguments

`S` | the similarity matrix calculated by SimS() function
`TrueLabel` | the real cell types used to indicate the vertical axis
`startPoint` | the posiition of the starting cell in the matrix
`fontSize` | the font size of the plot
`dataName` | the name of the data that will be showed in the plot
`sim` | indicate the input data is simialrity matrix or not

### Value

PstudoTime

PseudoTimePlot ggplot object of the pseudo-temporal ordering of cells

### Examples

    gfData <- GenesFilter(yan)
    TrueLabel <- ann$cell_type1
    res_SimS <- SimS(gfData)
    PlotPseudoTime(res_SimS$S,TrueLabel,startPoint=1)

[Package RCSL version 1.2.0 Index]