PlotMST {RCSL} | R Documentation

## Plot the visualization of constructed Minimum Spanning Tree based on the clustering results of RCSL

### Description

Plot the visualization of constructed Minimum Spanning Tree based on the clustering results of RCSL

### Usage

    PlotMST(
      drData,
      clustRes,
      TrueLabel,
      dataName = "",
      fontSize = 12,
      VisualMethod = "umap"
    )

### Arguments

`drData` | preprocessed gene expression data
`clustRes` | the clustering results identified by RCSL
`TrueLabel` | the real cell types to color the dots in plot
`dataName` | the name of the data that will be showed in the plot
`fontSize` | the font size of the plot
`VisualMethod` | the method for 2D visualization including UMAP,t-SNE and PCA

### Value

MSTPlot ggplot object of the visualization of constructed MST

### Examples

    gfData <- GenesFilter(yan)
    TrueLabel <- ann$cell_type1
    res_SimS <- SimS(gfData)
    C <- EstClusters(res_SimS$drData,res_SimS$S)
    res_BDSM <- BDSM(res_SimS$S,C)
    PlotMST(res_SimS$drData,res_BDSM$y,TrueLabel)

[Package RCSL version 1.2.0 Index]