RCSL {RCSL} | R Documentation

## Perform the RCSL program

### Description

Perform the RCSL program

### Usage

    RCSL(
      data,
      GF = TRUE,
      gfRatio = 0.025,
      pcRatio = 0.95,
      NN.method = "KNN",
      Dis.method = "Euclidean",
      neiRatio = 0.65
    )

### Arguments

`data` | normalizaed gene expression matrix(each column represents a cell)
`GF` | should I need the gene filter step?
`gfRatio` | the ratio of the gene filter
`pcRatio` | the ratio between the variance of the
`NN.method` | the method of finding neighbors
`Dis.method` | the distance metric in finding neighbors
`neiRatio` | ratio of the number of selected

### Value

gfData gene expression matrix after genes filtering

B block-diagonal matrix

C estimated number of clusters

y clustering results

### Examples

    data(yan)
    data <- log2(yan+1)
    RCSL(yan[,1:20])

[Package RCSL version 1.2.0 Index]