annoByCpG               Annotate integration sites by CpG sites.
annoByGene              Annotate integration sites by genes and TSSs.
annoByRepeat            Annotate integration sites by repeats and
                        microsatellites.
annoByVar               Annotate integration sites by clinical
                        variants.
blast_gene              Integration site annotation by gene data
blast_obj               Retroviral vector integration site object
cpg_exam_db             Data file for annoByCpG vignette
drawingKaryo            Draw the karyogram plot.
gene_exam_db            Data file for annoByGene vignette
makeData                Make data files for RIPAT.
makeDocument            Make the result object and document.
makeInputObj            Make the retroviral vector integration site
                        object.
makeInputObj2           Make the retroviral vector integration site
                        object.
micro_exam_db           Data file for annoByRepeat vignette
repeat_exam_db          Data file for annoByRepeat vignette
tss_exam_db             Data file for annoByGene vignette
var_exam_db             Data file for annoByVar vignette
