auxdata {RLSeq} | R Documentation

## Auxiliary Data

### Description

A list containing data used by RLSeq functions. It can also be useful for checking the available modes and genomes in RLSeq. See also the `data-raw/auxdata.R` script that was used to create it.

### Usage

    auxdata

### Format

An object of class `list` of length 10.

### Details

#### Structure

A named list containing the following entries:

- `db_cols`

  - A `tbl` with colors associated with each database in RLHub useful for plotting. See also RLHub::annotations.

- `annotypes`

  - A `tbl` containing the annotation databases and annotation types available from RLBase. See also RLHub::annotations.

- `ip_cols`

  - A `tbl` containing the colors associated with each "Immunoprecipitation type" (ip_type) in RLBase. See also RLHub::rlbase_samples.

- `mode_cols`

  - A `tbl` containing the colors associated with each R-loop mapping mode in RLHub::rlbase_samples.

- `heat_cols`

  - A `tbl` containing the colors associated with user-supplied data and RLBase data when running corrHeatmap.

- `label_cols`

  - A `tbl` containing the colors associated with the labels in RLBase. See also RLHub::rlbase_samples.

- `prediction_cols`

  - A `tbl` containing the colors associated with the predictions in RLBase. See also RLHub::rlbase_samples.

- `available_modes`

  - A `tbl` containing the modes available in RLBase and associated metadata. See also RLHub::rlbase_samples.

- `available_genomes`

  - A `character` showing all the official UCSC genomes available for use with RLSeq. See also available_genomes.

- `misc_modes`

  - A `character` showing the R-loop mapping modes that are lumped into the 'misc' category for simplification of plotting.

### Examples

    auxdata

[Package RLSeq version 1.0.0 Index]