plotRLFSRes {RLSeq} | R Documentation

## Plot RLFS analysis results

### Description

Plots the results of the R-loop-forming sequences (RLFS) analysis. The plot is a metaplot of the Z score distribution around RLFS with the p value from permutation testing annotated. See also analyzeRLFS.

### Usage

    plotRLFSRes(object, plotName = NULL, fft = FALSE, ...)

### Arguments

`object` | An RLRanges object with analyzeRLFS already run. Alternatively, can be the RLFS results object from an RLRanges (from `rlresult(object, "rlfsRes")`).
`plotName` | A Sample name used for plotting. If blank, the RLRanges `sampleName` metadata entry is used (see RLRanges).
`fft` | If TRUE, the Fourier transform of the Z-score is plotted instead. Default: FALSE.
`...` | Additional parameters passed to ggplot2::ggplot.

### Value

A ggplot object. See also ggplot2::ggplot.

### Examples

    # Example RLRanges dataset with analyzeRLFS() already run.
    rlr <- readRDS(system.file("extdata", "rlrsmall.rds", package = "RLSeq"))

    # Plot RLFS res
    plotRLFSRes(rlr)

    # Plot the Fourier transform instead
    plotRLFSRes(rlr, fft = TRUE)

[Package RLSeq version 1.0.0 Index]