Package: Rcade
Title: R-based analysis of ChIP-seq And Differential Expression - a
        tool for integrating a count-based ChIP-seq analysis with
        differential expression summary data
Version: 1.36.0
Date: 2012-01-25
Author: Jonathan Cairns
Maintainer: Jonathan Cairns <jmcairns200@gmail.com>
Description: Rcade (which stands for "R-based analysis of ChIP-seq And
        Differential Expression") is a tool for integrating ChIP-seq
        data with differential expression summary data, through a
        Bayesian framework. A key application is in identifing the
        genes targeted by a transcription factor of interest - that is,
        we collect genes that are associated with a ChIP-seq peak, and
        differential expression under some perturbation related to that
        TF.
Depends: R (>= 3.5.0), methods, GenomicRanges, Rsamtools, baySeq
Imports: utils, grDevices, stats, graphics, rgl, plotrix, S4Vectors (>=
        0.23.19), IRanges, GenomeInfoDb, GenomicAlignments
Suggests: limma, biomaRt, RUnit, BiocGenerics, BiocStyle
License: GPL-2
biocViews: DifferentialExpression, GeneExpression, Transcription,
        ChIPSeq, Sequencing, Genetics
git_url: https://git.bioconductor.org/packages/Rcade
git_branch: RELEASE_3_14
git_last_commit: 8803391
git_last_commit_date: 2021-10-26
Date/Publication: 2021-10-26
NeedsCompilation: no
Packaged: 2021-10-27 03:29:26 UTC; biocbuild
Built: R 4.1.1; ; 2021-10-27 12:54:20 UTC; windows
