getProt {Rcpi} | R Documentation

## Retrieve Protein Sequence in various Formats from Databases

### Description

Retrieve Protein Sequence in various Formats from Databases

### Usage

    getProt(id, from = c("uniprot", "kegg", "pdb"), type = c("fasta",
      "pdb", "aaseq"), parallel = 5)

### Arguments

`id` | A character vector, as the protein ID(s).
`from` | The database, one of `'uniprot'`, `'kegg'`, or `'pdb'`.
`type` | The returned protein format, one of `fasta`, `pdb`, or `aaseq`.
`parallel` | An integer, the parallel parameter, indicates how many process the user would like to use for retrieving the data (using RCurl), default is `5`. For regular cases, we recommend a number less than `20`.

### Details

This function retrieves protein sequence in various formats from three databases.

### Value

A length of `id` character list, each element containing the corresponding protein sequence(s) or file(s).

### Author(s)

Nan Xiao <https://nanx.me>

### See Also

See `getDrug` for retrieving drug molecules from five databases.

### Examples

    id = c('P00750', 'P00751', 'P00752')

    getProt(id, from = 'uniprot', type = 'aaseq')

[Package Rcpi version 1.30.0 Index]