nonReactomeId {ReactomeContentService4R} | R Documentation

## Non-Reactome id mappings

### Description

Mappings between non-Reactome identifiers and Reactome objects.

### Usage

    map2RefEntities(external.id)

    map2Events(external.id, resource, species, mapTo = c("pathways", "reactions"))

    event2Ids(event.id)

### Arguments

`external.id` | an id from external dabatases, e.g. ChEBI, UniProt
`resource` | database name other than Reactome (e.g. UniProt, GeneCards)
`species` | name or taxon id or dbId or abbreviation of species
`mapTo` | retrieve Pathways or Reactions where an identifier can be mapped to
`event.id` | a stable or db id of an Event (Pathways and Reactions)

### Details

Descriptions of functions:

- map2RefEntities maps a non-Reactome id to ReferenceEntities that store the given external id

- map2Events fetches Events related to a given non-Reactome id

- event2Ids gets all non-Reactome ids associated with a given Event

### Value

a list of ReferenceEntity information

a dataframe of Events associated with the given id

non-Reactome ids associated with a given Event

### Examples

    ## Not run:
    map2RefEntities("15377") #ChEBI id

    ## End(Not run)
    map2Events("Q7Z569", resource="GeneCards", species="human", mapTo="reactions")
    event2Ids("R-HSA-69541")

[Package ReactomeContentService4R version 1.2.0 Index]