result.pst {RiboDiPA} | R Documentation

## An example of differential pattern analysis result

### Description

An example output generated by the differential pattern analysis function `diffPatternTest`, including binned data, differential pattern results, etc.

### Usage

    data("result.pst")

### Format

A list of size 5

bin

  A list object of codon/bin-level results. Each element of the list is the result from a gene, containing columns: `pvalue`, `log2FoldChange`, and the adjusted p-value by method "gtxr"

gene

  Gene-level differential pattern results, including T-value, p-value, and q-value

classlabel

  See `diffPatternTest`

data

  The input data for differential pattern analysis in the format of a list of named matrices. In each element of the list, rows correspond to replicates,columns correspond to bins.

method

  See `diffPatternTest`

### Source

The data was adapted from Kasari et al 2019.

### Examples

    data(result.pst)
    plotTrack(data = data.psite, genes.list = c("YDR050C", "YDR064W"),
        replicates = NULL, exons = FALSE)

[Package RiboDiPA version 1.2.0 Index]