data.psite {RiboDiPA} | R Documentation

## An example of P-site coverage data

### Description

An example data set containing 4 ribo-seq replicates of 885 genes, two biological replicates each for wild type cells and New1 mutant cells, respectively. It is the output of P-site mapping funcion `psiteMapping`. It contains the p-site count at each location of the total transcript within each replicate.

### Usage

    data("data.psite")

### Format

A list of size 4

coverage

  ribosome P-site coverage tracks

counts

  ribosome P-site total count, one count per gene

psite.mapping

  P-site mapping offset rule

exons

  relative start and end positions of each exon in the total transcript if a given gene

### Source

Raw data was adapted from Kasari et al 2019.

### Examples

    data(data.psite)
    data.binned <- dataBinning(data = data.psite$coverage, bin.width = 0,
        zero.omit = FALSE, bin.from.5UTR = TRUE, cores = 2)

[Package RiboDiPA version 1.2.0 Index]