plotTest {RiboDiPA} | R Documentation

## Plotting ribosome footprint data from mapped P-sites at the bin level.

### Description

This function visualizes the ribosome footprint in the form of mapped P-site frequency at the bin level along the total transcript. Bins that test positive for statistically significant differences are marked in black. Plotting is implmented with the ggplot2 package.

### Usage

    plotTest(result, genes.list = NULL, threshold = 0.05)

### Arguments

`result` | Data object resulting from `diffPatternTest` or `diffPatternTestExon` functions or wrapper function `RiboDiPA`.
`genes.list` | `genes.list` is the list of genes for visualization. If `genes.list` is not specified, then only genes with significant differential patterns specified by q-value `threshold` will be plotted. If `genes.list` is not NULL, then `threshold` argument will be ignored.
`threshold` | The q-value threshold for genes whose footprint to be visualized. This argument is ignored if `genes.list` is not NULL.

### Value

Bin-level tracks of genes and test results.

### Examples

    data(result.pst)
    plotTest(result = result.pst, genes.list = NULL, threshold = 0.05)

[Package RiboDiPA version 1.2.0 Index]