plotTrack {RiboDiPA} | R Documentation

## Plotting ribosome footprint data at the mapped P-site level

### Description

This function visualizes the ribosome footprint in the form of P-site frequency at the per nucleotide level along the total transcript. Plotting is implemented with the ggplot2 package.

### Usage

    plotTrack(data, genes.list, replicates = NULL,exons = FALSE)

### Arguments

`data` | Data object from `psiteMapping` function or wrapper function `RiboDiPA`.
`genes.list` | A list of genes for visualization.
`replicates` | Names of the replicates for which the footprint to visualize. The default is for all.
`exons` | If value is `TRUE`, Ribo-seq footprints per exon of specified genes are also output.

### Value

Visualizes the Ribo-seq per nucleotide footprint on merged exons of the genes and replicates specified. If `exons` is `TRUE`, Ribo-seq footprint per exon of specified genes is also output.

### Examples

    data(data.psite)
    plotTrack(data = data.psite, genes.list = c("YDR050C", "YDR064W"),
        replicates = NULL, exons = FALSE)

[Package RiboDiPA version 1.2.0 Index]