rnb.plot.negative.boxplot {RnBeads} | R Documentation

## rnb.plot.negative.boxplot

### Description

Box plots of negative control probes

### Usage

    rnb.plot.negative.boxplot(
      rnb.set,
      sample.subset = 1:length(samples(rnb.set)),
      writeToFile = FALSE,
      name.prefix = NULL,
      ...
    )

### Arguments

`rnb.set` | `RnBeadSet` object with valid quality control information
`sample.subset` | an integer vector specifying the subset of samples for which the plotting should be performed
`writeToFile` | flag specifying whether the output should be saved as `ReportPlot`
`name.prefix` | in case `writeToFile` is `TRUE`, a `character` singleton specifying a prefix to the variable part of the image file names
`...` | other arguments to `createReportPlot`

### Value

plot as an object of type `ReportPlot` if `writeToFile` is `TRUE` and of class `ggplot` otherwise.

### Author(s)

Pavlo Lutsik

### Examples

    library(RnBeads.hg19)
    data(small.example.object)
    rnb.plot.negative.boxplot(rnb.set.example)

[Package RnBeads version 2.12.2 Index]