rnb.plot.biseq.coverage.violin {RnBeads} | R Documentation

## rnb.plot.biseq.coverage.violin

### Description

Plots the violin plots of the coverage distribution

### Usage

    rnb.plot.biseq.coverage.violin(
      rnbs.set,
      samples,
      fname = NULL,
      type = "sites",
      covg.range = NULL,
      ...
    )

### Arguments

`rnbs.set` | RnBiseqSet object
`samples` | unique sample identifiers. In case `rnb.getOption("identifiers.column")` is not `NULL`, `samples` should attain values from the corresponding column, or `colnames(meth(rnb.set))` otherwise
`fname` | base filename for the files to be plotted. If NULL, the plot will not be written to file
`type` | `character` singleton. If `site` the coverage information is plotted for each methylation site. Otherwise should be one of the regions returned by `rnb.region.types`
`covg.range` | Vector of length 2 specifying the range of coverage to be plotted. if `NULL` (default) the entire range will be plotted
`...` | other arguments to `createReportPlot`

### Value

plot as an object of type `ReportPlot` if `writeToFile` is `TRUE` and of class `ggplot` otherwise.

### Author(s)

Fabian Mueller

[Package RnBeads version 2.12.2 Index]