getSubCmdTokens,ClusterArchitecture-method {RnBeads} | R Documentation

## getSubCmdTokens-methods

### Description

Returns a string for the of command line corresponding to submitting a job with the given command to the cluster.

### Usage

    ## S4 method for signature 'ClusterArchitecture'
    getSubCmdTokens(
      object,
      cmd.tokens,
      log,
      job.name = "",
      res.req = character(0),
      depend.jobs = character(0)
    )

### Arguments

`object` | `ClusterArchitecture` object
`cmd.tokens` | a character vector specifying the executable command that should be wrapped in the cluster submission command
`log` | file name and path of the log file that the submitted job writes to
`job.name` | name of the submitted job
`res.req` | character vector specifying required resources. The resource requirements should be the values of the vector, the names should specify the resource name
`depend.jobs` | character vector containg names or ids of jobs the submitted job will depend on.

### Details

For a concrete child class implementation for a sun grid architecture specification see `getSubCmdTokens,ClusterArchitectureSGE-method`

### Value

A character vector containing the submission command tokens

### Author(s)

Fabian Mueller

[Package RnBeads version 2.12.2 Index]