translateID {RpsiXML} | R Documentation

## Finds identifiers of a given object

### Description

see `translateID-methods`

### Usage

    translateID(r, ...)

### Arguments

`r` | An object of psimi25Graph, psimi25Hypergraph, psimi25Interactor or a list of `psimi25Interactor`
`...` | the symbol of the ID to translate

### Details

see `translateID-methods`

### Value

The object of the same class as the parameter

### Author(s)

Jitao David Zhang <jitao_david.zhang@roche.com>

### See Also

see `translateID-methods`

### Examples

    xmlDir <- system.file("/extdata/psi25files",package="RpsiXML")

    hprdxml <- file.path(xmlDir, "hprd_200709_test.xml.gz")
    hprdSet <- parsePsimi25Interaction(hprdxml, HPRD.PSIMI25)

    it <- interactors(hprdSet)[[1]]
    translateID(it, "uniprot")
    translateID(it, "entrezgene")

    ##Not run
    intactxml <- file.path(xmlDir, "intact_2008_test.xml.gz")
    intactSet <- parsePsimi25Interaction(intactxml, INTACT.PSIMI25)
    intactGraph <- psimi25XML2Graph(intactxml, INTACT.PSIMI25)
    ## translate the nodes of the graph to another identifier
    intactGraphNew <- translateID(intactGraph,"sourceId")

    intactSetInteractors <- interactors(intactSet)
    intactXrefExample <- xref(intactSetInteractors[[1]])
    translateID(intactSetInteractors,"intact")
    translateID(intactSetInteractors[[1]],"intact")

    intactComplexxml <- file.path(xmlDir,"intact_complexSample.xml.gz")
    intactComplexSet <- parsePsimi25Complex(intactComplexxml, INTACT.PSIMI25)
    intactComplexGraph <- psimi25XML2Graph(intactComplexxml, INTACT.PSIMI25, type="complex")
    translateID(intactComplexGraph, "intact", "P49432")
    translateID(intactComplexGraph, "intact", NA)
    ## End(Not run)

[Package RpsiXML version 2.36.0 Index]