scExperiment {SCArray} | R Documentation

## Get a SummarizedExperiment

### Description

Gets an instance of SingleCellExperiment or SummarizedExperiment.

### Usage

    scExperiment(gdsfile, sce=TRUE, use.names=TRUE, load.row=TRUE, load.col=TRUE)

### Arguments

`gdsfile` | character for a file name, or a single-cell GDS object with class `SCArrayFileClass`
`sce` | if `TRUE`, return an instance of `SingleCellExperiment`, otherwise an instance of `SummarizedExperiment`
`use.names` | if `TRUE`, load `dimnames` from 'feature.id' and 'sample.id'
`load.row` | `TRUE` for loading `rowData` from the gds node "feature.data" in `gdsfile`
`load.col` | `TRUE` for loading `colData` from the gds node "sample.data" in `gdsfile`

### Value

Return an instance of `SingleCellExperiment` or `SummarizedExperiment`.

### Author(s)

Xiuwen Zheng

### See Also

`scOpen`, `scClose`

### Examples

    # a GDS file for SingleCellExperiment
    fn <- system.file("extdata", "LaMannoBrainData.gds", package="SCArray")

    sce <- scExperiment(fn)
    sce

[Package SCArray version 1.2.1 Index]