scConvGDS {SCArray} | R Documentation

## Create a GDS file

### Description

Creates a single-cell GDS file from an R object.

### Usage

    scConvGDS(obj, outfn, save.sp=TRUE, type=c("float32", "float64", "int32"),
        compress="LZMA_RA", clean=TRUE, verbose=TRUE)

### Arguments

`obj` | a dense/sparse matrix, DelayedMatrix, SummarizedExperiment or SingleCellExperiment
`outfn` | the output file name in GDS format
`save.sp` | if `TRUE`, save it to a sparse matrix in GDS; otherwise, store dense matrix
`type` | numeric data type in the output file
`compress` | the compression method, see `add.gdsn`
`clean` | TRUE
`verbose` | if `TRUE`, show information

### Value

Return the path of the output file.

### Author(s)

Xiuwen Zheng

### See Also

`scOpen`, `scClose`

### Examples

    # load a SingleCellExperiment object
    fn <- system.file("extdata", "LaMannoBrainSub.rds", package="SCArray")
    sce <- readRDS(fn)

    scConvGDS(sce, "test.gds")

    # remove the temporary output file
    unlink("test.gds")

[Package SCArray version 1.2.1 Index]