findSGVariants {SGSeq} | R Documentation

## Identify splice variants from splice graph

### Description

Identify splice variants from splice graph.

### Usage

    findSGVariants(features, maxnvariant = 20, annotate_events = TRUE,
      include = c("default", "closed", "all"), cores = 1)

### Arguments

`features` | `SGFeatures` object
`maxnvariant` | If more than `maxnvariant` variants are identified in an event, the event is skipped, resulting in a warning. Set to `NA` to include all events.
`annotate_events` | Logical indicating whether identified splice variants should be annotated in terms of canonical events. For details see help page for `annotateSGVariants`.
`include` | Character string indicating whether identified splice variants should be filtered. Possible options are “default” (only include variants for events with all variants closed), “closed” (only include closed variants) and “all” (include all variants).
`cores` | Number of cores available for parallel processing

### Value

`SGVariants` object

### Author(s)

Leonard Goldstein

### Examples

    sgv <- findSGVariants(sgf_pred)

[Package SGSeq version 1.28.0 Index]