a69ad5ab604c125d5cd80bc3b9a675eb *DESCRIPTION
8554c4b2f71d80ef455a1b0f1f29ae12 *INDEX
76d1671eed9147f9f8267bb11aeec698 *Meta/Rd.rds
c51ad89eedfa69de753be4cf6fd268f5 *Meta/data.rds
8503e676975364d771072956cdbca633 *Meta/features.rds
25dd4cfc5dee6df2a9f14b46f09aac1b *Meta/hsearch.rds
ce15c0e5cc6de1e2c42a1915b3be37b2 *Meta/links.rds
d9c50db0bef16fa9d499d4a7caee42ac *Meta/nsInfo.rds
3081785256e9d3b5d60728fdd324340f *Meta/package.rds
ed45f8459edd80cdcc296e0349f58bce *Meta/vignette.rds
d07d2d4c6efc48ac44c9c085222a90b6 *NAMESPACE
d6c68f1fe41ced6e98a766a3757313da *R/STAN
3a3801b8984baf749a96efc5beef751a *R/STAN.rdb
0ef71f77d4b05e86a9f67d815bd41637 *R/STAN.rdx
0386ef0f6036b3f03d214fd2c5da91f7 *data/example.rda
f9d9ddb81afb8c5e0e4c60f8154cc769 *data/pilot.hg19.rda
5071fabe0f749e294237ca0c4b345806 *data/trainRegions.rda
06c3d1e1a0a1da1a5ec7b9516fd41d9a *data/ucscGenes.rda
593645ee95f99afa807baf000159f9d9 *data/yeastTF_SGDGenes.rda
71cbda9b7d7c73639bba0c623c5be7fa *data/yeastTF_databychrom_ex.rda
9ba106e3e6d65bab3aa518e5f84752a6 *doc/STAN-knitr.R
6410327e96248e8bb795fce3b9e5633d *doc/STAN-knitr.Rnw
ffc35e18164d9d18c78a5d97163837a3 *doc/STAN-knitr.pdf
234f689f328f49277e309aefa4e0a663 *doc/index.html
c412fff30898c30bb6c8fb5e41de9116 *help/+5B+2CHMM+2CANY+2CANY+2CANY-method.html
bf61174a4a81c3695dd6801eae9b4775 *help/+5B+2CbdHMM+2CANY+2CANY+2CANY-method.html
191627948c2fbba521cc8714d1dd8d6b *help/AnIndex
df40a7a3fba4d2ab72d596ee298ea763 *help/DimNames.html
0f176682838f57b0aeac789d615f3bb2 *help/DirScore.html
0b3c4ce6ba606b2fcf404bb39b9e234d *help/Emission.html
50c1bc2221516bc020f06c4b05814963 *help/EmissionParams.html
b587a26c8030fe28002b85d52646fcab *help/HMM-class.html
5e64a72e89859c5eaeb958507acf23f3 *help/HMM.html
cb62f109e1bd02a7423cd7d062bd3259 *help/HMMEmission-class.html
349533c6a5eb4b7836f4ea1ebb6877ac *help/HMMEmission.html
f10edbdb5fcc552243fbab4abf592741 *help/InitProb.html
2178e62ddffc86164a70984e9ff3dd1a *help/LogLik.html
51486103aac1ee7d10da84423439f8da *help/STAN-package.html
9e4dc22f261fb7a5aa6c33c8ae3dad5d *help/STAN.rdb
a473a6525e4052d1e26219acf5f144b9 *help/STAN.rdx
4e8413e1eaa26c24fc8a85786492458e *help/StateNames.html
eb2ce7887c2e337cdc0fe0b039988d00 *help/Transitions.html
e95c96c4744b2b378e6a19cf517e8afd *help/aliases.rds
2c3686911ccbc0e76889033a16eaf70e *help/bdHMM-class.html
e9d4768997ab36aecf2b721f50df8e73 *help/bdHMM.html
7758bee202938851fa699cb1145388b4 *help/binarizeData.html
c31edb4d956090bed1b637d1eea82c49 *help/c2optimize.html
3398dc9a302c1f5d35a00f066f06e3e4 *help/call_dpoilog.html
68833e6a98bcfb7f68b4472664543d96 *help/data2Gviz.html
6e74085d6af37325d94b0a004d605bf9 *help/example.html
76ff23d3a705ed6056dad8e873655501 *help/fitBdClust.html
9b90928555d7da2c5a5fdc0b667a2dc7 *help/fitHMM.html
f42412a54edf5385e26c368cadda91a0 *help/flags.html
5c9c4529ccb151e46a819534a5532ba9 *help/getAvgSignal.html
3adc83ca91e3f9a2269280b4755daec9 *help/getLogLik.html
be984e19a2fd379ec4d510510463d7dd *help/getPosterior.html
cbc7d497402512319d5b9858193a6520 *help/getSizeFactors.html
603a40d8036bedc6faedd131a7e495e8 *help/getViterbi.html
198b821037b3fd8a0040d2544765f220 *help/initBdClust.html
bc3a5bad04a72a1a4177866838db413e *help/initBdHMM.html
c0b8a4654442fed94d825d26436dd086 *help/initHMM.html
7f6e3e19b93848ff761bfde9d29a8848 *help/observations.html
73c1a90a83a1256ca4048b6145b5fffb *help/paths.rds
158517ba8b308c53f2b11b1b2e4b4334 *help/pilot.hg19.html
ab3834dd41de44d32a15ae48e6dcc41b *help/runningMean.html
c412fff30898c30bb6c8fb5e41de9116 *help/sub-HMM-ANY-ANY-ANY-method.html
bf61174a4a81c3695dd6801eae9b4775 *help/sub-bdHMM-ANY-ANY-ANY-method.html
7856ec2d4417c0c8fbf1b06f290d4fc0 *help/trainRegions.html
61fa46ef542cc506c7b0768ab074aafc *help/ucscGenes.html
52699c2ec42e74b619df0fb653ad9700 *help/viterbi2GRanges.html
1d5731d43a009e7085a7c3a40b5a05fe *help/viterbi2Gviz.html
16975cf694577d646bbad074d65ff151 *help/yeastTF_SGDGenes.html
6a460e5fe1ed74d7b18c87a00295fc51 *help/yeastTF_databychrom_ex.html
c3e8cd603c96c99c8d4811203d035174 *html/00Index.html
5956d378d05b38cf4e73d449be734c42 *html/DimNames.html
c8c140231bc31a457e80ab1ae89f74bb *html/DirScore.html
623af7cdd29ff84465a6755be7b393a5 *html/Emission.html
f95386c84ebdc8d90dd7914e91680dc1 *html/EmissionParams.html
89d8c253365319f5fa6cc47f24b0c6a5 *html/HMM-class.html
34cc065a7264ab88ce8e2bbf2e577b16 *html/HMM.html
7845c585b74fc9550ebbf8eb07320dfc *html/HMMEmission-class.html
e36770e050f148faddf0f3d08af671a2 *html/HMMEmission.html
8c1f3dc61ebeac1163452ce3e34def7a *html/InitProb.html
e9fe7c6525b2cacbafc244ad01fa1b99 *html/LogLik.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
9915b2847ff4f6a56a8eb4950f0dc525 *html/STAN-package.html
df2a1697633eef86092bf79444f424ce *html/StateNames.html
b03893fb80c05f1218b89156ec927f09 *html/Transitions.html
61829d5befeaa30a82cf6b8c5846ff85 *html/bdHMM-class.html
428b896d61e6e3ba1f80aa39fad0706e *html/bdHMM.html
b4a5cb917979348a2b2ab0dc227cc590 *html/binarizeData.html
1ec1f4f239224eb60b7df930c4e7999b *html/c2optimize.html
c0626ce491479ce881fb23d7921ac4e9 *html/call_dpoilog.html
1445d31a38c3d4a3091d0691776f1610 *html/data2Gviz.html
605271748a5ed23c6a1fcc81ed7c135e *html/example.html
0bcdc1ff4b101e5f3456e3d382494d24 *html/fitBdClust.html
b5e0a4e22ff682a7579a4220d8877229 *html/fitHMM.html
085c7ffef3aae5ef819cc53cafe4e216 *html/flags.html
a32e66bc9b61119c65c1fe01ee2814d8 *html/getAvgSignal.html
b9dde24c88e3b0366cee2c13206050ee *html/getLogLik.html
e432a25757f16d98bd57407db49c0674 *html/getPosterior.html
64067e105109499a266c85597b27e3fa *html/getSizeFactors.html
eec97762dd180105ad6f4a08e727160f *html/getViterbi.html
719acbc54e8b0e5c09fa038c8cdcc5eb *html/initBdClust.html
dbfeddebf6262a46699d2cfbc12c5d01 *html/initBdHMM.html
7a6a8a57a73abd6b4b22abb74867c07c *html/initHMM.html
2e4e4de833d7bbf35786cedccf314105 *html/observations.html
3186d3857c9e33fcc3020d1623936e99 *html/pilot.hg19.html
0b1b4eb7589fe05bdd69ac4c13342462 *html/runningMean.html
580939470f8709a51cabe30d28158480 *html/sub-HMM-ANY-ANY-ANY-method.html
279269fb195b697445dc4dfea1359671 *html/sub-bdHMM-ANY-ANY-ANY-method.html
52bbab406730bd7a262f29a17a707935 *html/trainRegions.html
969b7a1177e4251947673fd7a9bba48a *html/ucscGenes.html
5eef580caae3b1fcbe6912c484a81ef2 *html/viterbi2GRanges.html
dcfa788c090f59a3fb4d13a2793b59bb *html/viterbi2Gviz.html
cbddc1c5677d2cbedf0329515ef159b4 *html/yeastTF_SGDGenes.html
88e6b74bab8a2fd8bebac98e6ffe9064 *html/yeastTF_databychrom_ex.html
de0b027c99962520a5f3b7a4279f07a1 *libs/i386/STAN.dll
837afc8275c610dc075e82ced406c4cd *libs/x64/STAN.dll
