FcsToTibble {Sconify} | R Documentation

## Takes a file as input and returns a data frame of cells by features

### Description

This function is a quick way to take the exprs content of a fcs file, do an asinh transform, and create a tibble data structure that can be further manipulated. Our default transform is asinh, but you just have to change the transform to anything else, and you'll get the raw data. This function is used in the main function process.multiple.files

### Usage

    FcsToTibble(file, transform = "asinh")

### Arguments

`file` | the fcs file containing cell infomration
`transform` | if set to asinh, then asinh transforms with scale arg 5

### Value

tibble of info contained within the fcs file

### Examples

    file <- system.file("extdata", "Bendall_et_al_Cell_Sample_C_basal.fcs",
        package = "Sconify")
    FcsToTibble(file)

[Package Sconify version 1.14.0 Index]