RocheSet-class {ShortRead} | R Documentation

## (Legacy) Roche (454) experiment-wide data container

### Description

This class is meant to coordinate all data in a Roche (454) experiment. See `SRSet` for additional details.

### Objects from the Class

Create objects from this class using one of the `RocheSet` methods documented below

### Slots

`sourcePath`:

  Object of class `"RochePath"` The file system location of the data used in this experiment.

`readIndex`:

  Object of class `"integer"` indexing reads included in the experiment; see `SRSet` for details on data representation in this class.

`readCount`:

  Object of class `"integer"` containing the number of reads associated with each sample; see `SRSet` for details on data representation in this class.

`phenoData`:

  Object of class `"AnnotatedDataFrame"` with as many rows as there are samples, containing information on experimental design.

`readData`:

  Object of class `"AnnotatedDataFrame"` containing as many rows as there are reads, containing information on each read in the experiment.

### Extends

Class `"SRSet"`, directly. Class `".Roche"`, directly. Class `".ShortReadBase"`, by class "SRSet", distance 2. Class `".ShortReadBase"`, by class ".Roche", distance 2.

### Methods

No methods defined with class "RocheSet" in the signature; see `SRSet` for inherited methods.

### Author(s)

Michael Lawrence <mflawrence@fhcrc.org>

### See Also

`SRSet`

### Examples

    showClass("RocheSet")

[Package ShortRead version 1.52.0 Index]