markerQualityControl {SubCellBarCode} | R Documentation

## Evaluate the quality of the marker proteins

### Description

Given the proteomics data, quality of the overlapped marker proteins are evaluated by correlating replicates of fractions.

### Usage

    markerQualityControl(coveredProteins, protein.data)

### Arguments

`coveredProteins` | character; list of marker proteins, gene symbols, that are covered in 3365 marker proteins.
`protein.data` | data.frame; fractionated proteomics data, rownames are gene symbols associated protein.

### Value

robustMarkers

### Examples

    {

    df <- loadData(SubCellBarCode::hcc827Ctrl)

    c.prots <- calculateCoveredProtein(rownames(df), markerProteins[,1])

    r.markers <- markerQualityControl(c.prots[1:5], df)
    }

[Package SubCellBarCode version 1.10.0 Index]