TFCatalog {TFutils} | R Documentation

## Constructor for TFCatalog

### Description

Constructor for TFCatalog

### Usage

    TFCatalog(name, nativeIds, HGNCmap, metadata)

### Arguments

`name` | informative character(1) for collection
`nativeIds` | character() vector of identifiers used by collection creators
`HGNCmap` | data.frame with column 1 nativeIds, column 2 HGNC or hgnc.heur for MSigDb and any other columns of use
`metadata` | a list of metadata elements

### Value

instance of TFCatalog

### Examples

    if (require("GSEABase")) {
     TFs_MSIG = TFCatalog(name="MsigDb.TFT",nativeIds=names(TFutils::tftColl),
     HGNCmap=data.frame(TFutils::tftCollMap,stringAsFactors=FALSE))
     TFs_MSIG
    }

[Package TFutils version 1.14.0 Index]