setupHIZE {TFutils} | R Documentation

## process a gene_attribute_matrix.txt file from harmonizeome into a GeneSetCollection

### Description

process a gene_attribute_matrix.txt file from harmonizeome into a GeneSetCollection

### Usage

    setupHIZE(txtfn = "gene_attribute_matrix.txt", tag)

### Arguments

`txtfn` | character(1) path to gene_attribute_matrix.txt file from harmonizeome
`tag` | character(1) will be added to shortDescription field of each GeneSet instance

### Value

GSEABase::GeneSetCollection

### Note

After uncompressing content of http://amp.pharm.mssm.edu/static/hdfs/harmonizome/data/cheappi/gene_attribute_matrix.txt.gz run this on gene_attribute_matrix.txt with tag="CHEA".

[Package TFutils version 1.14.0 Index]