GSE25055 {TNBC.CMS} | R Documentation

## Example TNBC microarray data

### Description

This is a TNBC microarray dataset from GSE25055 contained in a `SummarizedExperiment` object. It includes gene expression profiles and clinical information which can be accessed by the `assays` and `colData` functions, respectively. We obtained gene expression profiles of breast cancer samples from the `curatedBreastData` package and extracted TNBC samples based on the expression profiles and immunohistochemistry results.

### Source

https://bioconductor.org/packages/release/data/experiment/html/curatedBreastData.html

### References

Hatzis, C. et al. (2011). A genomic predictor of response and survival following taxane-anthracycline chemotherapy for invasive breast cancer JAMA, 305, 1873-81.

### Examples

    data(GSE25055)

    #Access gene expression profiles
    head(assays(GSE25055)[[1]])

    #Access clinical information
    head(colData(GSE25055))

[Package TNBC.CMS version 1.10.0 Index]