Toolbox for mRNA epigenetics sequencing analysis

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Documentation for package ‘TRESS’ version 1.0.0

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

Basal	Bin-level and region-level data from basal mouse brain samples
CallCandidates	Call candidate m6A regions or candidate differential m6A regions.
CallPeaks.multiRep	m6A peak calling with multiple replicates.
CallPeaks.oneRep	m6A peak calling with only one replicate.
CallPeaks.paramEsti	Parameter estimation in m6A peak calling with multiple replicates.
DivideBins	Obtain genomic bins and bin-level read counts from BAM files.
EstiMu	Estimation of m6A methylation.
EstiPhi	Dispersion estimation.
findBumps	Bump-finding from transcriptome bins.
ShowOnePeak	Visulization of a single peak along the genome.
TRESS_peak	Detecting m6A methylation regions from Methylated RNA Immunoprecipitation Sequencing.