computeLimmaDiffExpr,ToxicoSet-method {ToxicoGx} | R Documentation

## Conduct differential expression analysis using the limma R pacakge

### Description

WARNING: This function can take a very long time to compute!

### Usage

    ## S4 method for signature 'ToxicoSet'
    computeLimmaDiffExpr(object, buildTable = TRUE)

### Arguments

`object` | A [‘ToxicoSet'] object with a molecular profile named ’rna'
`buildTable` | ['logical'] Should the result of the eBayes function from limma be assembled into a data.table containing the result along with the gene, compound and durations names. Default it TRUE, otherwise this function with return the object produced by eBayes.

### Value

A ['data.table'] containing the results the limma differential expression analysis comparing control vs each dose level for each compound within each duration.

### Examples

    if (interactive()) {
      data(TGGATESsmall)
      analysis <- computeLimmaDiffExpr(TGGATESsmall)
    }

[Package ToxicoGx version 1.4.0 Index]