TreeAndLeaf-package {TreeAndLeaf} | R Documentation

## TreeAndLeaf: A graph layout for binary trees with focus on dendrogram leaves.

### Description

The TreeAndLeaf package combines unrooted and force-directed graph algorithms in order to layout binary trees, aiming to represent multiple layers of information onto dendrogram leaves.

### Details

Package: | TreeAndLeaf
Type: | Package
Depends: | R (>= 4.0)
Imports: | RedeR, igraph, ape
Suggests: | knitr, rmarkdown, BiocStyle, RUnit, BiocGenerics, stringr, RColorBrewer
License: | Artistic-2.0
biocViews: | NetworkEnrichment, GraphAndNetwork

### Index

formatTree: | A theme function for tree-and-leaf igraph objects.
treeAndLeaf: | Layout a TreeAndLeaf diagram.

Further information is available from the vignettes `vignette("TreeAndLeaf")`.

### Author(s)

Leonardo W. Kume, Luis E. A. Rizzardi, Milena A. Cardoso, Mauro A. A. Castro

### References

CASTRO, M. A. et al. RedeR: R/Bioconductor package for representing modular structures, nested networks and multiple levels of hierarchical associations. Genome Biology, 13(4):R29, 2012.

CASTRO, M. A. A. et al. Regulators of genetic risk of breast cancer identified by integrative network analysis. Nature Genetics, 48(1):12–21, 2016.

RUSU, A.; SANTIAGO, C. Grid Drawings of Binary Trees: An Experimental Study. Journal of Graph Algorithms and Applications, 12(2):131–195, 2008.

[Package TreeAndLeaf version 1.6.1 Index]