getSignInteractions {UMI4Cats} | R Documentation

## Get significant interactions from a GRangesList

### Description

Retrieves all significant interactions from the output of `callInteractions`.

### Usage

    getSignInteractions(gr_interactions)

### Arguments

`gr_interactions` | GRangesList outputed by `callInteractions`.

### Value

`GRanges` object with a list of significantly interacting regions.

### Examples

    data("ex_ciita_umi4c")
    umi <- ex_ciita_umi4c
    win_frags <- makeWindowFragments(umi, n_frags=8, sliding=1)

    gr <- callInteractions(umi, ~condition, win_frags, padj_threshold = 0.01, zscore_threshold=2)
    inter <- getSignInteractions(gr)

[Package UMI4Cats version 1.4.0 Index]