statsUMI4C {UMI4Cats} | R Documentation

## Statistics UMI4C

### Description

Creates a stats summary file and generates a summary plot describing statistics for processed UMI-4C samples.

### Usage

    statsUMI4C(wk_dir)

### Arguments

`wk_dir` | Working directory where to save the outputs generated by the UMI-4c analysis.

### Value

Returns a plot summarizing the main statistics of the processed UMI-4C experiments found in `wk_dir`. Also, writes a file named `stats_summary.txt` in `wk_dir/logs` that summarizes all the values represented in the plot.

### Examples

    statsUMI4C(wk_dir = system.file("extdata", "CIITA",
        package = "UMI4Cats"
    ))
    stats <- read.delim(system.file("extdata", "CIITA", "logs", "stats_summary.txt",
        package = "UMI4Cats"
    ))
    head(stats)

[Package UMI4Cats version 1.4.0 Index]