plotInteractionsUMI4C {UMI4Cats} | R Documentation

## Plot Interactions UMI4C

### Description

Plot the results of `callInteractions` together with the gene annotation and the trend.

### Usage

    plotInteractionsUMI4C(
      umi4c,
      gr_interactions,
      grouping = "condition",
      significant = TRUE,
      colors = NULL,
      xlim = NULL,
      ylim = NULL,
      TxDb = TxDb.Hsapiens.UCSC.hg19.knownGene::TxDb.Hsapiens.UCSC.hg19.knownGene,
      longest = TRUE,
      rel_heights = c(0.25, 0.5, 0.25),
      font_size = 14
    )

### Arguments

`umi4c` | UMI4C object as generated by `makeUMI4C`.
`gr_interactions` | GRangesList outputed by `callInteractions`.
`grouping` | Grouping used for the different samples. If none available or want to add new groupings, run `addGrouping`.
`significant` | Logical indicating whether to plot only significant interactions (default: TRUE).
`colors` | Named vector of colors to use for plotting for each group.
`xlim` | Limits for the plot x axis (genomic coordinates).
`ylim` | Limits of the trend y axis.
`TxDb` | TxDb object to use for drawing the genomic annotation.
`longest` | Logical indicating whether to plot only the longest transcripts for each gene in the gene annotation plot.
`rel_heights` | Numeric vector of length 3 or 4 (if differential plot) indicating the relative heights of each part of the UMI4C plot.
`font_size` | Base font size to use for the UMI4C plot. Default: 14.

### Value

Combined plot with gene annotation, trend and interaction plot.

[Package UMI4Cats version 1.4.0 Index]